miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10955 3' -54.3 NC_002794.1 + 193527 0.66 0.981328
Target:  5'- -cGCACCuuCCG-CGCguugUCUUGGGCu -3'
miRNA:   3'- gcUGUGGcuGGCaGCGa---AGAACUCGc -5'
10955 3' -54.3 NC_002794.1 + 33639 0.66 0.981328
Target:  5'- gCGGCACCG-CCGcacgggCGCgc--UGAGCGu -3'
miRNA:   3'- -GCUGUGGCuGGCa-----GCGaagaACUCGC- -5'
10955 3' -54.3 NC_002794.1 + 127808 0.66 0.981328
Target:  5'- uCGACGCCGAgcgagcgcCCGUCGUcggCccGAGCc -3'
miRNA:   3'- -GCUGUGGCU--------GGCAGCGaa-GaaCUCGc -5'
10955 3' -54.3 NC_002794.1 + 91013 0.66 0.981328
Target:  5'- cCGACACCGACUucaccgaGC-UCU-GGGCGg -3'
miRNA:   3'- -GCUGUGGCUGGcag----CGaAGAaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 69643 0.66 0.981328
Target:  5'- uCGGCAa-GGCgGUCGCgaagcagacCUUGAGCGu -3'
miRNA:   3'- -GCUGUggCUGgCAGCGaa-------GAACUCGC- -5'
10955 3' -54.3 NC_002794.1 + 141317 0.66 0.981328
Target:  5'- aCGGCACCGG-CGUCGgcUCgguggcGAGCGa -3'
miRNA:   3'- -GCUGUGGCUgGCAGCgaAGaa----CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 37380 0.66 0.979211
Target:  5'- gGGCGCaGGCCGUCGaagUCgcuguaGAGCGc -3'
miRNA:   3'- gCUGUGgCUGGCAGCga-AGaa----CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 55574 0.66 0.979211
Target:  5'- gGGCAgCCGAaaGUagaguaccUGCUUCUUGaAGCGg -3'
miRNA:   3'- gCUGU-GGCUggCA--------GCGAAGAAC-UCGC- -5'
10955 3' -54.3 NC_002794.1 + 71998 0.66 0.977858
Target:  5'- cCGAUACCGccggagcucgaggaaGCCGaggUCGCgcagccgCUUGAGCu -3'
miRNA:   3'- -GCUGUGGC---------------UGGC---AGCGaa-----GAACUCGc -5'
10955 3' -54.3 NC_002794.1 + 47409 0.66 0.97692
Target:  5'- aGcCGCCGucggcGCCGUCGCgcg--GAGCGc -3'
miRNA:   3'- gCuGUGGC-----UGGCAGCGaagaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 50770 0.66 0.97692
Target:  5'- gCGGCGgCGACgG-CGCgUCUcGGGCGg -3'
miRNA:   3'- -GCUGUgGCUGgCaGCGaAGAaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 125516 0.66 0.97445
Target:  5'- uCGcCAaaaCGGCCGUCGCggCgaacGAGCGc -3'
miRNA:   3'- -GCuGUg--GCUGGCAGCGaaGaa--CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 118791 0.66 0.97445
Target:  5'- aGGCuCCGcAgCGUCGCccgCUUGGGCu -3'
miRNA:   3'- gCUGuGGC-UgGCAGCGaa-GAACUCGc -5'
10955 3' -54.3 NC_002794.1 + 8048 0.66 0.97445
Target:  5'- aGACGCCGcACCGUCuugGCg----GGGCGc -3'
miRNA:   3'- gCUGUGGC-UGGCAG---CGaagaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 18649 0.66 0.971793
Target:  5'- cCGGCACCcgggacGACCGUCGCcgCUUccucGGCu -3'
miRNA:   3'- -GCUGUGG------CUGGCAGCGaaGAAc---UCGc -5'
10955 3' -54.3 NC_002794.1 + 22866 0.66 0.971793
Target:  5'- gGACGucCCGGCCGUCGCgcgCUUcccuGGCc -3'
miRNA:   3'- gCUGU--GGCUGGCAGCGaa-GAAc---UCGc -5'
10955 3' -54.3 NC_002794.1 + 96967 0.66 0.971793
Target:  5'- cCGACACC-ACCGU-GCcUCgcGAGCGc -3'
miRNA:   3'- -GCUGUGGcUGGCAgCGaAGaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 107214 0.67 0.968942
Target:  5'- cCGGCGCCG-CCGggcggcgCGCgaCggGGGCGg -3'
miRNA:   3'- -GCUGUGGCuGGCa------GCGaaGaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 141380 0.67 0.968942
Target:  5'- aCGGCgACCGuCCGUCG-UUCgggGGGCu -3'
miRNA:   3'- -GCUG-UGGCuGGCAGCgAAGaa-CUCGc -5'
10955 3' -54.3 NC_002794.1 + 157052 0.67 0.965892
Target:  5'- cCGGCGa-GACCGUCGCg----GAGCa -3'
miRNA:   3'- -GCUGUggCUGGCAGCGaagaaCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.