miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10955 3' -54.3 NC_002794.1 + 126612 0.77 0.499112
Target:  5'- cCGGCGCCGA-CGUCGCggCgUGAGCGc -3'
miRNA:   3'- -GCUGUGGCUgGCAGCGaaGaACUCGC- -5'
10955 3' -54.3 NC_002794.1 + 67673 0.76 0.556232
Target:  5'- aGACcucGCCGACCGUCGCggacUCcucgugauucacgUUGAGCGg -3'
miRNA:   3'- gCUG---UGGCUGGCAGCGa---AG-------------AACUCGC- -5'
10955 3' -54.3 NC_002794.1 + 43884 0.75 0.637218
Target:  5'- aGAUAcCCGGCCGUCGCcggcgUCUcgugagGAGCGg -3'
miRNA:   3'- gCUGU-GGCUGGCAGCGa----AGAa-----CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 120711 0.74 0.657322
Target:  5'- aGGCGCCG-CCGUCGUucUUCgucgUGGGCa -3'
miRNA:   3'- gCUGUGGCuGGCAGCG--AAGa---ACUCGc -5'
10955 3' -54.3 NC_002794.1 + 163837 0.73 0.736296
Target:  5'- aCGAUGuCCGACCG-CGCUggCUUGAGUu -3'
miRNA:   3'- -GCUGU-GGCUGGCaGCGAa-GAACUCGc -5'
10955 3' -54.3 NC_002794.1 + 44581 0.72 0.764705
Target:  5'- gCGGgACCGAgccaCCGcCGcCUUCUUGGGCGc -3'
miRNA:   3'- -GCUgUGGCU----GGCaGC-GAAGAACUCGC- -5'
10955 3' -54.3 NC_002794.1 + 88698 0.72 0.79209
Target:  5'- gCGAUACuCGACCGUCGgggUCgauugGGGCGg -3'
miRNA:   3'- -GCUGUG-GCUGGCAGCga-AGaa---CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 104675 0.72 0.8088
Target:  5'- aGACAC--ACCGUCGUggucuggUUCUUGAGCa -3'
miRNA:   3'- gCUGUGgcUGGCAGCG-------AAGAACUCGc -5'
10955 3' -54.3 NC_002794.1 + 72378 0.71 0.826616
Target:  5'- gCGGCcCCGGCCGUCGuCUUgaaCUcGAGCa -3'
miRNA:   3'- -GCUGuGGCUGGCAGC-GAA---GAaCUCGc -5'
10955 3' -54.3 NC_002794.1 + 193821 0.71 0.834839
Target:  5'- uGGCGCCGACgCGUCGCggCgccGGCa -3'
miRNA:   3'- gCUGUGGCUG-GCAGCGaaGaacUCGc -5'
10955 3' -54.3 NC_002794.1 + 14893 0.7 0.858412
Target:  5'- cCGAgACCGACCuUCGCgcUCgaucGAGCGg -3'
miRNA:   3'- -GCUgUGGCUGGcAGCGa-AGaa--CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 116645 0.7 0.858412
Target:  5'- gGGC-CCGGCCGUCcgGCU-CUUGAGgCGc -3'
miRNA:   3'- gCUGuGGCUGGCAG--CGAaGAACUC-GC- -5'
10955 3' -54.3 NC_002794.1 + 102127 0.7 0.865883
Target:  5'- gCGACACCGACagcgucuuCGUgCGCUUCggcGGCGu -3'
miRNA:   3'- -GCUGUGGCUG--------GCA-GCGAAGaacUCGC- -5'
10955 3' -54.3 NC_002794.1 + 123435 0.7 0.880209
Target:  5'- aGGCGgUGACCGUCGCc----GAGCGg -3'
miRNA:   3'- gCUGUgGCUGGCAGCGaagaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 51220 0.69 0.906271
Target:  5'- gCGGCcgGCCGGCCGaugggaaacggUCGCUUCUagaaggcguggGGGCGg -3'
miRNA:   3'- -GCUG--UGGCUGGC-----------AGCGAAGAa----------CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 143278 0.69 0.906271
Target:  5'- cCGGCGCCGGCCGcUCGgggUC--GGGCGg -3'
miRNA:   3'- -GCUGUGGCUGGC-AGCga-AGaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 82006 0.69 0.909872
Target:  5'- aCGACGCCGGCCGcugaCGCcgaaacccgacgaUCgcgUGGGCGg -3'
miRNA:   3'- -GCUGUGGCUGGCa---GCGa------------AGa--ACUCGC- -5'
10955 3' -54.3 NC_002794.1 + 31893 0.69 0.917953
Target:  5'- uCGAcCAgCGGCgCGUCGCUga-UGAGCGc -3'
miRNA:   3'- -GCU-GUgGCUG-GCAGCGAagaACUCGC- -5'
10955 3' -54.3 NC_002794.1 + 149231 0.69 0.923449
Target:  5'- aGGCGCCGccGCCGUCGCcggggUCgc-GGCGc -3'
miRNA:   3'- gCUGUGGC--UGGCAGCGa----AGaacUCGC- -5'
10955 3' -54.3 NC_002794.1 + 116440 0.68 0.926636
Target:  5'- gGACGCCGACgGUgGCgaugacgaaGAGCGg -3'
miRNA:   3'- gCUGUGGCUGgCAgCGaagaa----CUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.