miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10955 3' -54.3 NC_002794.1 + 157052 0.67 0.965892
Target:  5'- cCGGCGa-GACCGUCGCg----GAGCa -3'
miRNA:   3'- -GCUGUggCUGGCAGCGaagaaCUCGc -5'
10955 3' -54.3 NC_002794.1 + 43243 0.67 0.965892
Target:  5'- gCGGCACCGGCCGgaaCGCc----GGGUGg -3'
miRNA:   3'- -GCUGUGGCUGGCa--GCGaagaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 103820 0.67 0.965576
Target:  5'- gCGGCGCCGACguggaGUCGCaggcCUUgaccaccGAGCGg -3'
miRNA:   3'- -GCUGUGGCUGg----CAGCGaa--GAA-------CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 68983 0.67 0.963964
Target:  5'- gCGACGCCGGCguCGaCGCUUCUccuuccuccuccgcgUGcGCGa -3'
miRNA:   3'- -GCUGUGGCUG--GCaGCGAAGA---------------ACuCGC- -5'
10955 3' -54.3 NC_002794.1 + 14263 0.67 0.962637
Target:  5'- uCGACcCCGACCGagGUgUUCggcugGAGCGu -3'
miRNA:   3'- -GCUGuGGCUGGCagCG-AAGaa---CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 63901 0.67 0.962637
Target:  5'- --uCGCCGGCCGUCGCUcgCgcc-GCGa -3'
miRNA:   3'- gcuGUGGCUGGCAGCGAa-GaacuCGC- -5'
10955 3' -54.3 NC_002794.1 + 145555 0.67 0.962637
Target:  5'- gCGGC-CCGACCGguUCGCggac-GAGCGc -3'
miRNA:   3'- -GCUGuGGCUGGC--AGCGaagaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 61867 0.67 0.962637
Target:  5'- aCGACGCCGcgcGCCGUCGUcggCgccgcgcggcGAGCGc -3'
miRNA:   3'- -GCUGUGGC---UGGCAGCGaa-Gaa--------CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 113559 0.67 0.955492
Target:  5'- aGGCGCCgGACCGUCuGCgUCUc-GGCGu -3'
miRNA:   3'- gCUGUGG-CUGGCAG-CGaAGAacUCGC- -5'
10955 3' -54.3 NC_002794.1 + 112338 0.67 0.955492
Target:  5'- -cGCGCCGGCCGgcggCGCcggCggcgGGGCGg -3'
miRNA:   3'- gcUGUGGCUGGCa---GCGaa-Gaa--CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 94996 0.67 0.955492
Target:  5'- uGuCGCCGcuuGCUGUCGCUgaugGGGCGg -3'
miRNA:   3'- gCuGUGGC---UGGCAGCGAagaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 182200 0.67 0.951593
Target:  5'- uCGGCGCCGG-CGUCGCgccacgGGGCu -3'
miRNA:   3'- -GCUGUGGCUgGCAGCGaagaa-CUCGc -5'
10955 3' -54.3 NC_002794.1 + 66429 0.67 0.951593
Target:  5'- gCGGUugCGACCGUCGUUUCUguccGCc -3'
miRNA:   3'- -GCUGugGCUGGCAGCGAAGAacu-CGc -5'
10955 3' -54.3 NC_002794.1 + 152785 0.68 0.947472
Target:  5'- aGACGCUGACCG-CGCgc---GAGCu -3'
miRNA:   3'- gCUGUGGCUGGCaGCGaagaaCUCGc -5'
10955 3' -54.3 NC_002794.1 + 66956 0.68 0.947472
Target:  5'- uCGAgGCCGGCgaGUCGC-UCgccggggGAGCGu -3'
miRNA:   3'- -GCUgUGGCUGg-CAGCGaAGaa-----CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 184692 0.68 0.943126
Target:  5'- gGACGCCGGcggagggucguCCGUCGgcUCUUccGAGCGa -3'
miRNA:   3'- gCUGUGGCU-----------GGCAGCgaAGAA--CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 180522 0.68 0.938082
Target:  5'- aGAUcucuaucaGCCGAgccuCCGUCGCUUCcugccugcuggugUUGAGCa -3'
miRNA:   3'- gCUG--------UGGCU----GGCAGCGAAG-------------AACUCGc -5'
10955 3' -54.3 NC_002794.1 + 79214 0.68 0.933748
Target:  5'- cCGACACCGACCcucccggacgGUCGaCUUCUaccuGCa -3'
miRNA:   3'- -GCUGUGGCUGG----------CAGC-GAAGAacu-CGc -5'
10955 3' -54.3 NC_002794.1 + 121192 0.68 0.933748
Target:  5'- aCGACGauCCGAUCGgggUCGaCUUCggGGGCGg -3'
miRNA:   3'- -GCUGU--GGCUGGC---AGC-GAAGaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 117633 0.68 0.933748
Target:  5'- gGGCGCCGACCG-CGCggCcccggacgaaGAGCGc -3'
miRNA:   3'- gCUGUGGCUGGCaGCGaaGaa--------CUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.