Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10955 | 3' | -54.3 | NC_002794.1 | + | 79214 | 0.68 | 0.933748 |
Target: 5'- cCGACACCGACCcucccggacgGUCGaCUUCUaccuGCa -3' miRNA: 3'- -GCUGUGGCUGG----------CAGC-GAAGAacu-CGc -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 116440 | 0.68 | 0.926636 |
Target: 5'- gGACGCCGACgGUgGCgaugacgaaGAGCGg -3' miRNA: 3'- gCUGUGGCUGgCAgCGaagaa----CUCGC- -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 149231 | 0.69 | 0.923449 |
Target: 5'- aGGCGCCGccGCCGUCGCcggggUCgc-GGCGc -3' miRNA: 3'- gCUGUGGC--UGGCAGCGa----AGaacUCGC- -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 31893 | 0.69 | 0.917953 |
Target: 5'- uCGAcCAgCGGCgCGUCGCUga-UGAGCGc -3' miRNA: 3'- -GCU-GUgGCUG-GCAGCGAagaACUCGC- -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 82006 | 0.69 | 0.909872 |
Target: 5'- aCGACGCCGGCCGcugaCGCcgaaacccgacgaUCgcgUGGGCGg -3' miRNA: 3'- -GCUGUGGCUGGCa---GCGa------------AGa--ACUCGC- -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 143278 | 0.69 | 0.906271 |
Target: 5'- cCGGCGCCGGCCGcUCGgggUC--GGGCGg -3' miRNA: 3'- -GCUGUGGCUGGC-AGCga-AGaaCUCGC- -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 51220 | 0.69 | 0.906271 |
Target: 5'- gCGGCcgGCCGGCCGaugggaaacggUCGCUUCUagaaggcguggGGGCGg -3' miRNA: 3'- -GCUG--UGGCUGGC-----------AGCGAAGAa----------CUCGC- -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 123435 | 0.7 | 0.880209 |
Target: 5'- aGGCGgUGACCGUCGCc----GAGCGg -3' miRNA: 3'- gCUGUgGCUGGCAGCGaagaaCUCGC- -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 102127 | 0.7 | 0.865883 |
Target: 5'- gCGACACCGACagcgucuuCGUgCGCUUCggcGGCGu -3' miRNA: 3'- -GCUGUGGCUG--------GCA-GCGAAGaacUCGC- -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 14893 | 0.7 | 0.858412 |
Target: 5'- cCGAgACCGACCuUCGCgcUCgaucGAGCGg -3' miRNA: 3'- -GCUgUGGCUGGcAGCGa-AGaa--CUCGC- -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 116645 | 0.7 | 0.858412 |
Target: 5'- gGGC-CCGGCCGUCcgGCU-CUUGAGgCGc -3' miRNA: 3'- gCUGuGGCUGGCAG--CGAaGAACUC-GC- -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 193821 | 0.71 | 0.834839 |
Target: 5'- uGGCGCCGACgCGUCGCggCgccGGCa -3' miRNA: 3'- gCUGUGGCUG-GCAGCGaaGaacUCGc -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 72378 | 0.71 | 0.826616 |
Target: 5'- gCGGCcCCGGCCGUCGuCUUgaaCUcGAGCa -3' miRNA: 3'- -GCUGuGGCUGGCAGC-GAA---GAaCUCGc -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 104675 | 0.72 | 0.8088 |
Target: 5'- aGACAC--ACCGUCGUggucuggUUCUUGAGCa -3' miRNA: 3'- gCUGUGgcUGGCAGCG-------AAGAACUCGc -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 88698 | 0.72 | 0.79209 |
Target: 5'- gCGAUACuCGACCGUCGgggUCgauugGGGCGg -3' miRNA: 3'- -GCUGUG-GCUGGCAGCga-AGaa---CUCGC- -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 44581 | 0.72 | 0.764705 |
Target: 5'- gCGGgACCGAgccaCCGcCGcCUUCUUGGGCGc -3' miRNA: 3'- -GCUgUGGCU----GGCaGC-GAAGAACUCGC- -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 163837 | 0.73 | 0.736296 |
Target: 5'- aCGAUGuCCGACCG-CGCUggCUUGAGUu -3' miRNA: 3'- -GCUGU-GGCUGGCaGCGAa-GAACUCGc -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 120711 | 0.74 | 0.657322 |
Target: 5'- aGGCGCCG-CCGUCGUucUUCgucgUGGGCa -3' miRNA: 3'- gCUGUGGCuGGCAGCG--AAGa---ACUCGc -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 43884 | 0.75 | 0.637218 |
Target: 5'- aGAUAcCCGGCCGUCGCcggcgUCUcgugagGAGCGg -3' miRNA: 3'- gCUGU-GGCUGGCAGCGa----AGAa-----CUCGC- -5' |
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10955 | 3' | -54.3 | NC_002794.1 | + | 67673 | 0.76 | 0.556232 |
Target: 5'- aGACcucGCCGACCGUCGCggacUCcucgugauucacgUUGAGCGg -3' miRNA: 3'- gCUG---UGGCUGGCAGCGa---AG-------------AACUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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