miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10955 3' -54.3 NC_002794.1 + 8048 0.66 0.97445
Target:  5'- aGACGCCGcACCGUCuugGCg----GGGCGc -3'
miRNA:   3'- gCUGUGGC-UGGCAG---CGaagaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 14263 0.67 0.962637
Target:  5'- uCGACcCCGACCGagGUgUUCggcugGAGCGu -3'
miRNA:   3'- -GCUGuGGCUGGCagCG-AAGaa---CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 14893 0.7 0.858412
Target:  5'- cCGAgACCGACCuUCGCgcUCgaucGAGCGg -3'
miRNA:   3'- -GCUgUGGCUGGcAGCGa-AGaa--CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 18649 0.66 0.971793
Target:  5'- cCGGCACCcgggacGACCGUCGCcgCUUccucGGCu -3'
miRNA:   3'- -GCUGUGG------CUGGCAGCGaaGAAc---UCGc -5'
10955 3' -54.3 NC_002794.1 + 22866 0.66 0.971793
Target:  5'- gGACGucCCGGCCGUCGCgcgCUUcccuGGCc -3'
miRNA:   3'- gCUGU--GGCUGGCAGCGaa-GAAc---UCGc -5'
10955 3' -54.3 NC_002794.1 + 23984 0.68 0.933748
Target:  5'- cCGGCGCC-ACCGUCGCUccgUCcgacGGGCc -3'
miRNA:   3'- -GCUGUGGcUGGCAGCGA---AGaa--CUCGc -5'
10955 3' -54.3 NC_002794.1 + 31893 0.69 0.917953
Target:  5'- uCGAcCAgCGGCgCGUCGCUga-UGAGCGc -3'
miRNA:   3'- -GCU-GUgGCUG-GCAGCGAagaACUCGC- -5'
10955 3' -54.3 NC_002794.1 + 33639 0.66 0.981328
Target:  5'- gCGGCACCG-CCGcacgggCGCgc--UGAGCGu -3'
miRNA:   3'- -GCUGUGGCuGGCa-----GCGaagaACUCGC- -5'
10955 3' -54.3 NC_002794.1 + 37380 0.66 0.979211
Target:  5'- gGGCGCaGGCCGUCGaagUCgcuguaGAGCGc -3'
miRNA:   3'- gCUGUGgCUGGCAGCga-AGaa----CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 43243 0.67 0.965892
Target:  5'- gCGGCACCGGCCGgaaCGCc----GGGUGg -3'
miRNA:   3'- -GCUGUGGCUGGCa--GCGaagaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 43884 0.75 0.637218
Target:  5'- aGAUAcCCGGCCGUCGCcggcgUCUcgugagGAGCGg -3'
miRNA:   3'- gCUGU-GGCUGGCAGCGa----AGAa-----CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 44581 0.72 0.764705
Target:  5'- gCGGgACCGAgccaCCGcCGcCUUCUUGGGCGc -3'
miRNA:   3'- -GCUgUGGCU----GGCaGC-GAAGAACUCGC- -5'
10955 3' -54.3 NC_002794.1 + 47409 0.66 0.97692
Target:  5'- aGcCGCCGucggcGCCGUCGCgcg--GAGCGc -3'
miRNA:   3'- gCuGUGGC-----UGGCAGCGaagaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 50770 0.66 0.97692
Target:  5'- gCGGCGgCGACgG-CGCgUCUcGGGCGg -3'
miRNA:   3'- -GCUGUgGCUGgCaGCGaAGAaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 51220 0.69 0.906271
Target:  5'- gCGGCcgGCCGGCCGaugggaaacggUCGCUUCUagaaggcguggGGGCGg -3'
miRNA:   3'- -GCUG--UGGCUGGC-----------AGCGAAGAa----------CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 55574 0.66 0.979211
Target:  5'- gGGCAgCCGAaaGUagaguaccUGCUUCUUGaAGCGg -3'
miRNA:   3'- gCUGU-GGCUggCA--------GCGAAGAAC-UCGC- -5'
10955 3' -54.3 NC_002794.1 + 61867 0.67 0.962637
Target:  5'- aCGACGCCGcgcGCCGUCGUcggCgccgcgcggcGAGCGc -3'
miRNA:   3'- -GCUGUGGC---UGGCAGCGaa-Gaa--------CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 63901 0.67 0.962637
Target:  5'- --uCGCCGGCCGUCGCUcgCgcc-GCGa -3'
miRNA:   3'- gcuGUGGCUGGCAGCGAa-GaacuCGC- -5'
10955 3' -54.3 NC_002794.1 + 66429 0.67 0.951593
Target:  5'- gCGGUugCGACCGUCGUUUCUguccGCc -3'
miRNA:   3'- -GCUGugGCUGGCAGCGAAGAacu-CGc -5'
10955 3' -54.3 NC_002794.1 + 66956 0.68 0.947472
Target:  5'- uCGAgGCCGGCgaGUCGC-UCgccggggGAGCGu -3'
miRNA:   3'- -GCUgUGGCUGg-CAGCGaAGaa-----CUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.