miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10955 3' -54.3 NC_002794.1 + 67673 0.76 0.556232
Target:  5'- aGACcucGCCGACCGUCGCggacUCcucgugauucacgUUGAGCGg -3'
miRNA:   3'- gCUG---UGGCUGGCAGCGa---AG-------------AACUCGC- -5'
10955 3' -54.3 NC_002794.1 + 68983 0.67 0.963964
Target:  5'- gCGACGCCGGCguCGaCGCUUCUccuuccuccuccgcgUGcGCGa -3'
miRNA:   3'- -GCUGUGGCUG--GCaGCGAAGA---------------ACuCGC- -5'
10955 3' -54.3 NC_002794.1 + 69643 0.66 0.981328
Target:  5'- uCGGCAa-GGCgGUCGCgaagcagacCUUGAGCGu -3'
miRNA:   3'- -GCUGUggCUGgCAGCGaa-------GAACUCGC- -5'
10955 3' -54.3 NC_002794.1 + 71998 0.66 0.977858
Target:  5'- cCGAUACCGccggagcucgaggaaGCCGaggUCGCgcagccgCUUGAGCu -3'
miRNA:   3'- -GCUGUGGC---------------UGGC---AGCGaa-----GAACUCGc -5'
10955 3' -54.3 NC_002794.1 + 72378 0.71 0.826616
Target:  5'- gCGGCcCCGGCCGUCGuCUUgaaCUcGAGCa -3'
miRNA:   3'- -GCUGuGGCUGGCAGC-GAA---GAaCUCGc -5'
10955 3' -54.3 NC_002794.1 + 79214 0.68 0.933748
Target:  5'- cCGACACCGACCcucccggacgGUCGaCUUCUaccuGCa -3'
miRNA:   3'- -GCUGUGGCUGG----------CAGC-GAAGAacu-CGc -5'
10955 3' -54.3 NC_002794.1 + 82006 0.69 0.909872
Target:  5'- aCGACGCCGGCCGcugaCGCcgaaacccgacgaUCgcgUGGGCGg -3'
miRNA:   3'- -GCUGUGGCUGGCa---GCGa------------AGa--ACUCGC- -5'
10955 3' -54.3 NC_002794.1 + 88698 0.72 0.79209
Target:  5'- gCGAUACuCGACCGUCGgggUCgauugGGGCGg -3'
miRNA:   3'- -GCUGUG-GCUGGCAGCga-AGaa---CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 91013 0.66 0.981328
Target:  5'- cCGACACCGACUucaccgaGC-UCU-GGGCGg -3'
miRNA:   3'- -GCUGUGGCUGGcag----CGaAGAaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 94996 0.67 0.955492
Target:  5'- uGuCGCCGcuuGCUGUCGCUgaugGGGCGg -3'
miRNA:   3'- gCuGUGGC---UGGCAGCGAagaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 96967 0.66 0.971793
Target:  5'- cCGACACC-ACCGU-GCcUCgcGAGCGc -3'
miRNA:   3'- -GCUGUGGcUGGCAgCGaAGaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 102127 0.7 0.865883
Target:  5'- gCGACACCGACagcgucuuCGUgCGCUUCggcGGCGu -3'
miRNA:   3'- -GCUGUGGCUG--------GCA-GCGAAGaacUCGC- -5'
10955 3' -54.3 NC_002794.1 + 103820 0.67 0.965576
Target:  5'- gCGGCGCCGACguggaGUCGCaggcCUUgaccaccGAGCGg -3'
miRNA:   3'- -GCUGUGGCUGg----CAGCGaa--GAA-------CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 104675 0.72 0.8088
Target:  5'- aGACAC--ACCGUCGUggucuggUUCUUGAGCa -3'
miRNA:   3'- gCUGUGgcUGGCAGCG-------AAGAACUCGc -5'
10955 3' -54.3 NC_002794.1 + 107214 0.67 0.968942
Target:  5'- cCGGCGCCG-CCGggcggcgCGCgaCggGGGCGg -3'
miRNA:   3'- -GCUGUGGCuGGCa------GCGaaGaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 112338 0.67 0.955492
Target:  5'- -cGCGCCGGCCGgcggCGCcggCggcgGGGCGg -3'
miRNA:   3'- gcUGUGGCUGGCa---GCGaa-Gaa--CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 113559 0.67 0.955492
Target:  5'- aGGCGCCgGACCGUCuGCgUCUc-GGCGu -3'
miRNA:   3'- gCUGUGG-CUGGCAG-CGaAGAacUCGC- -5'
10955 3' -54.3 NC_002794.1 + 116440 0.68 0.926636
Target:  5'- gGACGCCGACgGUgGCgaugacgaaGAGCGg -3'
miRNA:   3'- gCUGUGGCUGgCAgCGaagaa----CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 116645 0.7 0.858412
Target:  5'- gGGC-CCGGCCGUCcgGCU-CUUGAGgCGc -3'
miRNA:   3'- gCUGuGGCUGGCAG--CGAaGAACUC-GC- -5'
10955 3' -54.3 NC_002794.1 + 117633 0.68 0.933748
Target:  5'- gGGCGCCGACCG-CGCggCcccggacgaaGAGCGc -3'
miRNA:   3'- gCUGUGGCUGGCaGCGaaGaa--------CUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.