miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10955 3' -54.3 NC_002794.1 + 193821 0.71 0.834839
Target:  5'- uGGCGCCGACgCGUCGCggCgccGGCa -3'
miRNA:   3'- gCUGUGGCUG-GCAGCGaaGaacUCGc -5'
10955 3' -54.3 NC_002794.1 + 193527 0.66 0.981328
Target:  5'- -cGCACCuuCCG-CGCguugUCUUGGGCu -3'
miRNA:   3'- gcUGUGGcuGGCaGCGa---AGAACUCGc -5'
10955 3' -54.3 NC_002794.1 + 184692 0.68 0.943126
Target:  5'- gGACGCCGGcggagggucguCCGUCGgcUCUUccGAGCGa -3'
miRNA:   3'- gCUGUGGCU-----------GGCAGCgaAGAA--CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 182200 0.67 0.951593
Target:  5'- uCGGCGCCGG-CGUCGCgccacgGGGCu -3'
miRNA:   3'- -GCUGUGGCUgGCAGCGaagaa-CUCGc -5'
10955 3' -54.3 NC_002794.1 + 180522 0.68 0.938082
Target:  5'- aGAUcucuaucaGCCGAgccuCCGUCGCUUCcugccugcuggugUUGAGCa -3'
miRNA:   3'- gCUG--------UGGCU----GGCAGCGAAG-------------AACUCGc -5'
10955 3' -54.3 NC_002794.1 + 163837 0.73 0.736296
Target:  5'- aCGAUGuCCGACCG-CGCUggCUUGAGUu -3'
miRNA:   3'- -GCUGU-GGCUGGCaGCGAa-GAACUCGc -5'
10955 3' -54.3 NC_002794.1 + 157052 0.67 0.965892
Target:  5'- cCGGCGa-GACCGUCGCg----GAGCa -3'
miRNA:   3'- -GCUGUggCUGGCAGCGaagaaCUCGc -5'
10955 3' -54.3 NC_002794.1 + 152785 0.68 0.947472
Target:  5'- aGACGCUGACCG-CGCgc---GAGCu -3'
miRNA:   3'- gCUGUGGCUGGCaGCGaagaaCUCGc -5'
10955 3' -54.3 NC_002794.1 + 149231 0.69 0.923449
Target:  5'- aGGCGCCGccGCCGUCGCcggggUCgc-GGCGc -3'
miRNA:   3'- gCUGUGGC--UGGCAGCGa----AGaacUCGC- -5'
10955 3' -54.3 NC_002794.1 + 145555 0.67 0.962637
Target:  5'- gCGGC-CCGACCGguUCGCggac-GAGCGc -3'
miRNA:   3'- -GCUGuGGCUGGC--AGCGaagaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 143278 0.69 0.906271
Target:  5'- cCGGCGCCGGCCGcUCGgggUC--GGGCGg -3'
miRNA:   3'- -GCUGUGGCUGGC-AGCga-AGaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 141380 0.67 0.968942
Target:  5'- aCGGCgACCGuCCGUCG-UUCgggGGGCu -3'
miRNA:   3'- -GCUG-UGGCuGGCAGCgAAGaa-CUCGc -5'
10955 3' -54.3 NC_002794.1 + 141317 0.66 0.981328
Target:  5'- aCGGCACCGG-CGUCGgcUCgguggcGAGCGa -3'
miRNA:   3'- -GCUGUGGCUgGCAGCgaAGaa----CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 135480 0.67 0.965892
Target:  5'- aCGACGCCG-CCGUCGaCgcgCgcGGGCc -3'
miRNA:   3'- -GCUGUGGCuGGCAGC-Gaa-GaaCUCGc -5'
10955 3' -54.3 NC_002794.1 + 127808 0.66 0.981328
Target:  5'- uCGACGCCGAgcgagcgcCCGUCGUcggCccGAGCc -3'
miRNA:   3'- -GCUGUGGCU--------GGCAGCGaa-GaaCUCGc -5'
10955 3' -54.3 NC_002794.1 + 126612 0.77 0.499112
Target:  5'- cCGGCGCCGA-CGUCGCggCgUGAGCGc -3'
miRNA:   3'- -GCUGUGGCUgGCAGCGaaGaACUCGC- -5'
10955 3' -54.3 NC_002794.1 + 125516 0.66 0.97445
Target:  5'- uCGcCAaaaCGGCCGUCGCggCgaacGAGCGc -3'
miRNA:   3'- -GCuGUg--GCUGGCAGCGaaGaa--CUCGC- -5'
10955 3' -54.3 NC_002794.1 + 123435 0.7 0.880209
Target:  5'- aGGCGgUGACCGUCGCc----GAGCGg -3'
miRNA:   3'- gCUGUgGCUGGCAGCGaagaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 121192 0.68 0.933748
Target:  5'- aCGACGauCCGAUCGgggUCGaCUUCggGGGCGg -3'
miRNA:   3'- -GCUGU--GGCUGGC---AGC-GAAGaaCUCGC- -5'
10955 3' -54.3 NC_002794.1 + 120711 0.74 0.657322
Target:  5'- aGGCGCCG-CCGUCGUucUUCgucgUGGGCa -3'
miRNA:   3'- gCUGUGGCuGGCAGCG--AAGa---ACUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.