miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10955 5' -62 NC_002794.1 + 14485 0.66 0.746493
Target:  5'- gCUCGCuguUCGcGGCgGCggCCCGcGCUCgCg -3'
miRNA:   3'- -GAGCG---AGCuCCGgUGa-GGGC-CGAGgG- -5'
10955 5' -62 NC_002794.1 + 140005 0.66 0.746493
Target:  5'- -gUGCgggugGAGGCCGCggaggCCgCGGCcCCCg -3'
miRNA:   3'- gaGCGag---CUCCGGUGa----GG-GCCGaGGG- -5'
10955 5' -62 NC_002794.1 + 156202 0.66 0.737359
Target:  5'- gUCGCcggUCGgaGGGCCggcgACUCCgccggCGGCUCCg -3'
miRNA:   3'- gAGCG---AGC--UCCGG----UGAGG-----GCCGAGGg -5'
10955 5' -62 NC_002794.1 + 191188 0.66 0.737359
Target:  5'- -gCGCUCGcccGGCCGCccgCCCGcucgcucgcucGCUCUCu -3'
miRNA:   3'- gaGCGAGCu--CCGGUGa--GGGC-----------CGAGGG- -5'
10955 5' -62 NC_002794.1 + 191796 0.66 0.737359
Target:  5'- uUCGCUCGAccgcccgcucGGCCGCUCgaGGa--CCg -3'
miRNA:   3'- gAGCGAGCU----------CCGGUGAGggCCgagGG- -5'
10955 5' -62 NC_002794.1 + 187897 0.66 0.728145
Target:  5'- uCUCGCgCGGuGCCGCUCgCCcgccgGGC-CCCg -3'
miRNA:   3'- -GAGCGaGCUcCGGUGAG-GG-----CCGaGGG- -5'
10955 5' -62 NC_002794.1 + 78981 0.66 0.728145
Target:  5'- -cUGCUgcUGcGGCCGCUCCCGGagucgcggcgaCUCCa -3'
miRNA:   3'- gaGCGA--GCuCCGGUGAGGGCC-----------GAGGg -5'
10955 5' -62 NC_002794.1 + 66247 0.66 0.728145
Target:  5'- -gCGCUUGcGGCgACccgUCCGGC-CCCg -3'
miRNA:   3'- gaGCGAGCuCCGgUGa--GGGCCGaGGG- -5'
10955 5' -62 NC_002794.1 + 14765 0.66 0.718858
Target:  5'- --aGCcgUCGAGGCCGCUgaggCCGGCgaggCCg -3'
miRNA:   3'- gagCG--AGCUCCGGUGAg---GGCCGa---GGg -5'
10955 5' -62 NC_002794.1 + 13719 0.66 0.718858
Target:  5'- -gCGCUCGAccgugcGGacccacaCGCUCCCGGCcggCCg -3'
miRNA:   3'- gaGCGAGCU------CCg------GUGAGGGCCGa--GGg -5'
10955 5' -62 NC_002794.1 + 141600 0.66 0.718858
Target:  5'- gUCGC-CG-GGCgGCUCggcgaCCGGCUCgCg -3'
miRNA:   3'- gAGCGaGCuCCGgUGAG-----GGCCGAGgG- -5'
10955 5' -62 NC_002794.1 + 78408 0.66 0.718858
Target:  5'- cCUCGCcgCGAcucuCCGCUCCCGGCgUCa- -3'
miRNA:   3'- -GAGCGa-GCUcc--GGUGAGGGCCG-AGgg -5'
10955 5' -62 NC_002794.1 + 66441 0.66 0.718858
Target:  5'- gUCGUUUcuguccGCCGCUCCUccacccccagGGCUCCCg -3'
miRNA:   3'- gAGCGAGcuc---CGGUGAGGG----------CCGAGGG- -5'
10955 5' -62 NC_002794.1 + 103000 0.66 0.718858
Target:  5'- gUCGCUCGAcucGaGCCGCUagCCCGcccgccagccccGCUCUCu -3'
miRNA:   3'- gAGCGAGCU---C-CGGUGA--GGGC------------CGAGGG- -5'
10955 5' -62 NC_002794.1 + 63910 0.66 0.717925
Target:  5'- gUCGCUCGc-GCCGCgaccgccgCCCGGCcggcgagUCUCg -3'
miRNA:   3'- gAGCGAGCucCGGUGa-------GGGCCG-------AGGG- -5'
10955 5' -62 NC_002794.1 + 119371 0.66 0.709504
Target:  5'- cCUCGUUCGcguggucgagcuGGGCCAgCaCCUGGCgccgcagCCCg -3'
miRNA:   3'- -GAGCGAGC------------UCCGGU-GaGGGCCGa------GGG- -5'
10955 5' -62 NC_002794.1 + 79959 0.66 0.709504
Target:  5'- --aGCUCGuGGCgUACgaccCCCGGCUCg- -3'
miRNA:   3'- gagCGAGCuCCG-GUGa---GGGCCGAGgg -5'
10955 5' -62 NC_002794.1 + 141111 0.66 0.709504
Target:  5'- gUCGUgggaCGAaccGCCGCcaCCCGGCUCCg -3'
miRNA:   3'- gAGCGa---GCUc--CGGUGa-GGGCCGAGGg -5'
10955 5' -62 NC_002794.1 + 105712 0.66 0.700094
Target:  5'- -cCGCUCGAGGCga-UCgCGGCggCCg -3'
miRNA:   3'- gaGCGAGCUCCGgugAGgGCCGagGG- -5'
10955 5' -62 NC_002794.1 + 113787 0.66 0.700094
Target:  5'- gCUC-CUCGcGGGCgCGCUCUCGGUcCUCg -3'
miRNA:   3'- -GAGcGAGC-UCCG-GUGAGGGCCGaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.