Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10955 | 5' | -62 | NC_002794.1 | + | 180679 | 0.8 | 0.119522 |
Target: 5'- aCUCGCc---GGCCGCUCCCGGCgCCCg -3' miRNA: 3'- -GAGCGagcuCCGGUGAGGGCCGaGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 13423 | 0.79 | 0.138342 |
Target: 5'- -aCGCUCuGGGuCCuCUCCUGGCUCCCg -3' miRNA: 3'- gaGCGAGcUCC-GGuGAGGGCCGAGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 184191 | 0.76 | 0.237822 |
Target: 5'- -gCGCccggCGAGGcCCGCUCCCGcccccgaaccaGCUCCCg -3' miRNA: 3'- gaGCGa---GCUCC-GGUGAGGGC-----------CGAGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 101243 | 0.74 | 0.316436 |
Target: 5'- uUCGCUCcggcgcgcagcggGGGGCCGCcCCCGGCgCCg -3' miRNA: 3'- gAGCGAG-------------CUCCGGUGaGGGCCGaGGg -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 84773 | 0.74 | 0.297192 |
Target: 5'- -cCGUcCGAGGCCcggCCCGGCUCUCu -3' miRNA: 3'- gaGCGaGCUCCGGugaGGGCCGAGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 47294 | 0.73 | 0.355469 |
Target: 5'- cCUCGCccCGAGGUCGguuuuuCUuccgaggguggggugCCCGGCUCCCg -3' miRNA: 3'- -GAGCGa-GCUCCGGU------GA---------------GGGCCGAGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 31611 | 0.73 | 0.359927 |
Target: 5'- --aGCUCGAacaGCCGCUCCCG-CUCCUc -3' miRNA: 3'- gagCGAGCUc--CGGUGAGGGCcGAGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 58010 | 0.73 | 0.359927 |
Target: 5'- gUCGCcgcCGGGGCCGC-CgCCGGCgaaCCCg -3' miRNA: 3'- gAGCGa--GCUCCGGUGaG-GGCCGa--GGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 48909 | 0.73 | 0.352519 |
Target: 5'- --aGCUCGGGGCCGCUCCgCaGCgCCa -3' miRNA: 3'- gagCGAGCUCCGGUGAGG-GcCGaGGg -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 69056 | 0.72 | 0.375067 |
Target: 5'- -cCGCUCGccacGGGCCGC-CgCCGGCcgCCCu -3' miRNA: 3'- gaGCGAGC----UCCGGUGaG-GGCCGa-GGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 81118 | 0.71 | 0.422167 |
Target: 5'- uUCGacgUCGGcaucuaucaccacGGCCGCUCcauCCGGCUCCCc -3' miRNA: 3'- gAGCg--AGCU-------------CCGGUGAG---GGCCGAGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 81411 | 0.71 | 0.431335 |
Target: 5'- --gGCUCGGGaGCUGCUcgCCCGGCUUCg -3' miRNA: 3'- gagCGAGCUC-CGGUGA--GGGCCGAGGg -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 130168 | 0.71 | 0.414754 |
Target: 5'- -aCGCgcgCGAGaGCCGCcgCaCCGGCUCuCCg -3' miRNA: 3'- gaGCGa--GCUC-CGGUGa-G-GGCCGAG-GG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 6954 | 0.71 | 0.448298 |
Target: 5'- uCUCGguCUCG-GGCuCGCUCCCGcuCUCCCc -3' miRNA: 3'- -GAGC--GAGCuCCG-GUGAGGGCc-GAGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 185947 | 0.71 | 0.414754 |
Target: 5'- --gGCUCGcGGCCGCgCCCGuuUCCCu -3' miRNA: 3'- gagCGAGCuCCGGUGaGGGCcgAGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 59296 | 0.71 | 0.414754 |
Target: 5'- -cCGCUCGAcGCCGCgcagcgCCaCGGCgcgCCCg -3' miRNA: 3'- gaGCGAGCUcCGGUGa-----GG-GCCGa--GGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 67903 | 0.7 | 0.474416 |
Target: 5'- cCUCGCcCGucuCgGCUCCCGGCUCUCc -3' miRNA: 3'- -GAGCGaGCuccGgUGAGGGCCGAGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 144167 | 0.7 | 0.492244 |
Target: 5'- -aCGCUCGuGGGCUAUcUgCGGCUCCUc -3' miRNA: 3'- gaGCGAGC-UCCGGUGaGgGCCGAGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 126331 | 0.7 | 0.519545 |
Target: 5'- -cCGCUCGcuGaCCGCcgucuucgugUCCCGGCUCCg -3' miRNA: 3'- gaGCGAGCucC-GGUG----------AGGGCCGAGGg -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 85054 | 0.7 | 0.504906 |
Target: 5'- -gCGCUCGAcgaccGGCCACgccgcgucugcgccCCCGGuCUCUCa -3' miRNA: 3'- gaGCGAGCU-----CCGGUGa-------------GGGCC-GAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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