miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10955 5' -62 NC_002794.1 + 180679 0.8 0.119522
Target:  5'- aCUCGCc---GGCCGCUCCCGGCgCCCg -3'
miRNA:   3'- -GAGCGagcuCCGGUGAGGGCCGaGGG- -5'
10955 5' -62 NC_002794.1 + 13423 0.79 0.138342
Target:  5'- -aCGCUCuGGGuCCuCUCCUGGCUCCCg -3'
miRNA:   3'- gaGCGAGcUCC-GGuGAGGGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 184191 0.76 0.237822
Target:  5'- -gCGCccggCGAGGcCCGCUCCCGcccccgaaccaGCUCCCg -3'
miRNA:   3'- gaGCGa---GCUCC-GGUGAGGGC-----------CGAGGG- -5'
10955 5' -62 NC_002794.1 + 84773 0.74 0.297192
Target:  5'- -cCGUcCGAGGCCcggCCCGGCUCUCu -3'
miRNA:   3'- gaGCGaGCUCCGGugaGGGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 101243 0.74 0.316436
Target:  5'- uUCGCUCcggcgcgcagcggGGGGCCGCcCCCGGCgCCg -3'
miRNA:   3'- gAGCGAG-------------CUCCGGUGaGGGCCGaGGg -5'
10955 5' -62 NC_002794.1 + 48909 0.73 0.352519
Target:  5'- --aGCUCGGGGCCGCUCCgCaGCgCCa -3'
miRNA:   3'- gagCGAGCUCCGGUGAGG-GcCGaGGg -5'
10955 5' -62 NC_002794.1 + 47294 0.73 0.355469
Target:  5'- cCUCGCccCGAGGUCGguuuuuCUuccgaggguggggugCCCGGCUCCCg -3'
miRNA:   3'- -GAGCGa-GCUCCGGU------GA---------------GGGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 31611 0.73 0.359927
Target:  5'- --aGCUCGAacaGCCGCUCCCG-CUCCUc -3'
miRNA:   3'- gagCGAGCUc--CGGUGAGGGCcGAGGG- -5'
10955 5' -62 NC_002794.1 + 58010 0.73 0.359927
Target:  5'- gUCGCcgcCGGGGCCGC-CgCCGGCgaaCCCg -3'
miRNA:   3'- gAGCGa--GCUCCGGUGaG-GGCCGa--GGG- -5'
10955 5' -62 NC_002794.1 + 69056 0.72 0.375067
Target:  5'- -cCGCUCGccacGGGCCGC-CgCCGGCcgCCCu -3'
miRNA:   3'- gaGCGAGC----UCCGGUGaG-GGCCGa-GGG- -5'
10955 5' -62 NC_002794.1 + 185947 0.71 0.414754
Target:  5'- --gGCUCGcGGCCGCgCCCGuuUCCCu -3'
miRNA:   3'- gagCGAGCuCCGGUGaGGGCcgAGGG- -5'
10955 5' -62 NC_002794.1 + 59296 0.71 0.414754
Target:  5'- -cCGCUCGAcGCCGCgcagcgCCaCGGCgcgCCCg -3'
miRNA:   3'- gaGCGAGCUcCGGUGa-----GG-GCCGa--GGG- -5'
10955 5' -62 NC_002794.1 + 130168 0.71 0.414754
Target:  5'- -aCGCgcgCGAGaGCCGCcgCaCCGGCUCuCCg -3'
miRNA:   3'- gaGCGa--GCUC-CGGUGa-G-GGCCGAG-GG- -5'
10955 5' -62 NC_002794.1 + 81118 0.71 0.422167
Target:  5'- uUCGacgUCGGcaucuaucaccacGGCCGCUCcauCCGGCUCCCc -3'
miRNA:   3'- gAGCg--AGCU-------------CCGGUGAG---GGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 81411 0.71 0.431335
Target:  5'- --gGCUCGGGaGCUGCUcgCCCGGCUUCg -3'
miRNA:   3'- gagCGAGCUC-CGGUGA--GGGCCGAGGg -5'
10955 5' -62 NC_002794.1 + 6954 0.71 0.448298
Target:  5'- uCUCGguCUCG-GGCuCGCUCCCGcuCUCCCc -3'
miRNA:   3'- -GAGC--GAGCuCCG-GUGAGGGCc-GAGGG- -5'
10955 5' -62 NC_002794.1 + 145568 0.7 0.465623
Target:  5'- uUCGCggaCGAGcGCCgacggagcgGCggCCGGCUCCCg -3'
miRNA:   3'- gAGCGa--GCUC-CGG---------UGagGGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 67903 0.7 0.474416
Target:  5'- cCUCGCcCGucuCgGCUCCCGGCUCUCc -3'
miRNA:   3'- -GAGCGaGCuccGgUGAGGGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 73220 0.7 0.492244
Target:  5'- cCUC-UUCGGGGCCua--CCGGCUCCUc -3'
miRNA:   3'- -GAGcGAGCUCCGGugagGGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 144167 0.7 0.492244
Target:  5'- -aCGCUCGuGGGCUAUcUgCGGCUCCUc -3'
miRNA:   3'- gaGCGAGC-UCCGGUGaGgGCCGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.