miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10955 5' -62 NC_002794.1 + 85054 0.7 0.504906
Target:  5'- -gCGCUCGAcgaccGGCCACgccgcgucugcgccCCCGGuCUCUCa -3'
miRNA:   3'- gaGCGAGCU-----CCGGUGa-------------GGGCC-GAGGG- -5'
10955 5' -62 NC_002794.1 + 126331 0.7 0.519545
Target:  5'- -cCGCUCGcuGaCCGCcgucuucgugUCCCGGCUCCg -3'
miRNA:   3'- gaGCGAGCucC-GGUG----------AGGGCCGAGGg -5'
10955 5' -62 NC_002794.1 + 154335 0.69 0.528779
Target:  5'- gUCGUccCGGGuGCCGCggCCGaGCUCCCg -3'
miRNA:   3'- gAGCGa-GCUC-CGGUGagGGC-CGAGGG- -5'
10955 5' -62 NC_002794.1 + 79038 0.69 0.528779
Target:  5'- -cUGC-CGGcccGGCCGCUCCCGcGCUCgCu -3'
miRNA:   3'- gaGCGaGCU---CCGGUGAGGGC-CGAGgG- -5'
10955 5' -62 NC_002794.1 + 32498 0.69 0.538072
Target:  5'- -aUGCUCGAcGUC-UUgCCGGCUCCCg -3'
miRNA:   3'- gaGCGAGCUcCGGuGAgGGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 90476 0.69 0.547421
Target:  5'- -gCGCggCGGGGCCGCcgUCCCGcGCgaucggccgUCCCc -3'
miRNA:   3'- gaGCGa-GCUCCGGUG--AGGGC-CG---------AGGG- -5'
10955 5' -62 NC_002794.1 + 56904 0.69 0.556822
Target:  5'- -cCGCgCGuGGCCACgggcgCCgGGCUgCCg -3'
miRNA:   3'- gaGCGaGCuCCGGUGa----GGgCCGAgGG- -5'
10955 5' -62 NC_002794.1 + 68768 0.69 0.556822
Target:  5'- -cCGC-CGGGGCgCcggACgCCCGGCUCUCg -3'
miRNA:   3'- gaGCGaGCUCCG-G---UGaGGGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 65110 0.69 0.556822
Target:  5'- cCUCGUggucCGAGGUCGCgcgccugUCCGaGCUCCUc -3'
miRNA:   3'- -GAGCGa---GCUCCGGUGa------GGGC-CGAGGG- -5'
10955 5' -62 NC_002794.1 + 17963 0.69 0.556822
Target:  5'- aCUCGCcCG-GGCCGUgagCCUGGCgCCCa -3'
miRNA:   3'- -GAGCGaGCuCCGGUGa--GGGCCGaGGG- -5'
10955 5' -62 NC_002794.1 + 180605 0.69 0.556822
Target:  5'- cCUCGCgccgCG-GGCCACgacaCGGCggCCCa -3'
miRNA:   3'- -GAGCGa---GCuCCGGUGagg-GCCGa-GGG- -5'
10955 5' -62 NC_002794.1 + 123566 0.69 0.566267
Target:  5'- uUCGCcuUCGAGcGCCACggccgccgCCCGuGCagcgUCCCg -3'
miRNA:   3'- gAGCG--AGCUC-CGGUGa-------GGGC-CG----AGGG- -5'
10955 5' -62 NC_002794.1 + 22612 0.69 0.566267
Target:  5'- -aCGCUCGAgccgaucgGGCCGCUCgaGGCgCUCg -3'
miRNA:   3'- gaGCGAGCU--------CCGGUGAGggCCGaGGG- -5'
10955 5' -62 NC_002794.1 + 30333 0.69 0.575754
Target:  5'- gUCGCcgaagUCGAuGGCCACcuUCCCGaGCgacaggCCCu -3'
miRNA:   3'- gAGCG-----AGCU-CCGGUG--AGGGC-CGa-----GGG- -5'
10955 5' -62 NC_002794.1 + 113931 0.69 0.575754
Target:  5'- -cCGCcgaggCGAcgGGCCGCUgCCgGGCUUCCu -3'
miRNA:   3'- gaGCGa----GCU--CCGGUGA-GGgCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 58437 0.68 0.585276
Target:  5'- -aCGC-CGAGGCCACgcugcgCCUGGC-CgCg -3'
miRNA:   3'- gaGCGaGCUCCGGUGa-----GGGCCGaGgG- -5'
10955 5' -62 NC_002794.1 + 99610 0.68 0.585276
Target:  5'- -gCGCUCGc-GCCGC-CUCGGC-CCCg -3'
miRNA:   3'- gaGCGAGCucCGGUGaGGGCCGaGGG- -5'
10955 5' -62 NC_002794.1 + 48300 0.68 0.585276
Target:  5'- --aGCUCGAGGCUcgaguccaccgGCUucgugcacacggCCCGGUacUCCCg -3'
miRNA:   3'- gagCGAGCUCCGG-----------UGA------------GGGCCG--AGGG- -5'
10955 5' -62 NC_002794.1 + 99266 0.68 0.593871
Target:  5'- --gGCUCGGgggcuccGGCgCGCUCCCGGgCUCUUc -3'
miRNA:   3'- gagCGAGCU-------CCG-GUGAGGGCC-GAGGG- -5'
10955 5' -62 NC_002794.1 + 67435 0.68 0.594828
Target:  5'- -gCGUgUCGc-GCCGCUUCgGGCUCCCg -3'
miRNA:   3'- gaGCG-AGCucCGGUGAGGgCCGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.