miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10955 5' -62 NC_002794.1 + 105712 0.66 0.700094
Target:  5'- -cCGCUCGAGGCga-UCgCGGCggCCg -3'
miRNA:   3'- gaGCGAGCUCCGgugAGgGCCGagGG- -5'
10955 5' -62 NC_002794.1 + 186105 0.66 0.700094
Target:  5'- gUCGC-CGucGCCGC-CgCCGGgUCCCc -3'
miRNA:   3'- gAGCGaGCucCGGUGaG-GGCCgAGGG- -5'
10955 5' -62 NC_002794.1 + 104258 0.67 0.690632
Target:  5'- --aGCUCGGGcaGCCGCUCggCCGGCaCCg -3'
miRNA:   3'- gagCGAGCUC--CGGUGAG--GGCCGaGGg -5'
10955 5' -62 NC_002794.1 + 189519 0.67 0.690632
Target:  5'- gUCGCggaucagCGGGuGCCGCUCCCaGUcgaUCCa -3'
miRNA:   3'- gAGCGa------GCUC-CGGUGAGGGcCG---AGGg -5'
10955 5' -62 NC_002794.1 + 105290 0.67 0.681128
Target:  5'- gUUGCUCGGGGU----CCCGGCUCa- -3'
miRNA:   3'- gAGCGAGCUCCGgugaGGGCCGAGgg -5'
10955 5' -62 NC_002794.1 + 69027 0.67 0.681128
Target:  5'- -aCGC-CGGcGCC-CUCgCCGGCUUCCu -3'
miRNA:   3'- gaGCGaGCUcCGGuGAG-GGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 110375 0.67 0.680176
Target:  5'- gUCgGCUCucGGCCGCUCCUcguccgaGGaCUCCUc -3'
miRNA:   3'- gAG-CGAGcuCCGGUGAGGG-------CC-GAGGG- -5'
10955 5' -62 NC_002794.1 + 193774 0.67 0.675408
Target:  5'- gCUCGCUCGc--CCGCUCgaucgcccgacgacgCCGGCgCCCg -3'
miRNA:   3'- -GAGCGAGCuccGGUGAG---------------GGCCGaGGG- -5'
10955 5' -62 NC_002794.1 + 149685 0.67 0.671588
Target:  5'- -gCGCUCGAcuGGCCGCgggggccgCCUGGCgggugggCCg -3'
miRNA:   3'- gaGCGAGCU--CCGGUGa-------GGGCCGa------GGg -5'
10955 5' -62 NC_002794.1 + 46236 0.67 0.652431
Target:  5'- gCUCGCUCGccGGCgGCUCgUCcGCUUCCu -3'
miRNA:   3'- -GAGCGAGCu-CCGgUGAG-GGcCGAGGG- -5'
10955 5' -62 NC_002794.1 + 183120 0.67 0.652431
Target:  5'- -gUGUUCGGcGGCgGCUCCCGuacgcgcaGCUCCg -3'
miRNA:   3'- gaGCGAGCU-CCGgUGAGGGC--------CGAGGg -5'
10955 5' -62 NC_002794.1 + 52792 0.67 0.642827
Target:  5'- -aCGCUCGA-GCCGCUCgucggacgCCGGCagCUCg -3'
miRNA:   3'- gaGCGAGCUcCGGUGAG--------GGCCGa-GGG- -5'
10955 5' -62 NC_002794.1 + 62744 0.67 0.642827
Target:  5'- -cCGCcCGcGGCCGuCUCgcuCCGGCUCCg -3'
miRNA:   3'- gaGCGaGCuCCGGU-GAG---GGCCGAGGg -5'
10955 5' -62 NC_002794.1 + 125810 0.67 0.642827
Target:  5'- -aCGCUCGccGGGCUcuGCgUCCuCGGCgCCCu -3'
miRNA:   3'- gaGCGAGC--UCCGG--UG-AGG-GCCGaGGG- -5'
10955 5' -62 NC_002794.1 + 186001 0.67 0.642827
Target:  5'- -cCGC-CGGGcuccGCCGCUCCgGGCccgggCCCg -3'
miRNA:   3'- gaGCGaGCUC----CGGUGAGGgCCGa----GGG- -5'
10955 5' -62 NC_002794.1 + 193980 0.68 0.633216
Target:  5'- -cCGC-CGcGGCCGCUaccgccgccCCCGGCUUCg -3'
miRNA:   3'- gaGCGaGCuCCGGUGA---------GGGCCGAGGg -5'
10955 5' -62 NC_002794.1 + 135346 0.68 0.633216
Target:  5'- aUCGCUCGAGaGUCAgaUCCCGGUg--- -3'
miRNA:   3'- gAGCGAGCUC-CGGUg-AGGGCCGaggg -5'
10955 5' -62 NC_002794.1 + 55415 0.68 0.623604
Target:  5'- --gGC-CGAGGCgAC-CCCGGCgUCCg -3'
miRNA:   3'- gagCGaGCUCCGgUGaGGGCCG-AGGg -5'
10955 5' -62 NC_002794.1 + 71878 0.68 0.623604
Target:  5'- -cCGCUCGAcgucguGGaCgCGCUCUCGcaGCUCCCg -3'
miRNA:   3'- gaGCGAGCU------CC-G-GUGAGGGC--CGAGGG- -5'
10955 5' -62 NC_002794.1 + 13860 0.68 0.613998
Target:  5'- gUCGC-CGccGCCGCgaCCCGGUUCuCCg -3'
miRNA:   3'- gAGCGaGCucCGGUGa-GGGCCGAG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.