Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10955 | 5' | -62 | NC_002794.1 | + | 13860 | 0.68 | 0.613998 |
Target: 5'- gUCGC-CGccGCCGCgaCCCGGUUCuCCg -3' miRNA: 3'- gAGCGaGCucCGGUGa-GGGCCGAG-GG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 80423 | 0.68 | 0.613998 |
Target: 5'- -gCGCcgggCGGGGCCGC-CgCCGGCggccgccggCCCg -3' miRNA: 3'- gaGCGa---GCUCCGGUGaG-GGCCGa--------GGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 46203 | 0.68 | 0.613998 |
Target: 5'- gCUCGCUCGccGCCG-UUCCGGCcagCUCg -3' miRNA: 3'- -GAGCGAGCucCGGUgAGGGCCGa--GGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 21944 | 0.68 | 0.612078 |
Target: 5'- -gCGCUCGucgaaggccgucGGCCGCUCCCgcGGCgCCg -3' miRNA: 3'- gaGCGAGCu-----------CCGGUGAGGG--CCGaGGg -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 66361 | 0.68 | 0.604404 |
Target: 5'- uUCGUcccagUCGucGCCGCUCUCgucgaacgcgGGCUCCCc -3' miRNA: 3'- gAGCG-----AGCucCGGUGAGGG----------CCGAGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 71742 | 0.68 | 0.604404 |
Target: 5'- -aCGC-CGaAGGCCGC-CgCCGGCUCUUc -3' miRNA: 3'- gaGCGaGC-UCCGGUGaG-GGCCGAGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 86899 | 0.68 | 0.604404 |
Target: 5'- -cCGg-CGGGGCCGCcgaCCCGGUgacgCCCg -3' miRNA: 3'- gaGCgaGCUCCGGUGa--GGGCCGa---GGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 74021 | 0.68 | 0.604404 |
Target: 5'- -cUGUUCGGccGCCAC-CCCGGCcCCCg -3' miRNA: 3'- gaGCGAGCUc-CGGUGaGGGCCGaGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 180863 | 0.68 | 0.594828 |
Target: 5'- cCUCGUcgGAGGCgGCggaUCCGGCgcgCCCg -3' miRNA: 3'- -GAGCGagCUCCGgUGa--GGGCCGa--GGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 68936 | 0.68 | 0.594828 |
Target: 5'- gUCGCcCGcGGGCCGCggCgCCGGCgccucUCCCu -3' miRNA: 3'- gAGCGaGC-UCCGGUGa-G-GGCCG-----AGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 67435 | 0.68 | 0.594828 |
Target: 5'- -gCGUgUCGc-GCCGCUUCgGGCUCCCg -3' miRNA: 3'- gaGCG-AGCucCGGUGAGGgCCGAGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 99266 | 0.68 | 0.593871 |
Target: 5'- --gGCUCGGgggcuccGGCgCGCUCCCGGgCUCUUc -3' miRNA: 3'- gagCGAGCU-------CCG-GUGAGGGCC-GAGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 48300 | 0.68 | 0.585276 |
Target: 5'- --aGCUCGAGGCUcgaguccaccgGCUucgugcacacggCCCGGUacUCCCg -3' miRNA: 3'- gagCGAGCUCCGG-----------UGA------------GGGCCG--AGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 58437 | 0.68 | 0.585276 |
Target: 5'- -aCGC-CGAGGCCACgcugcgCCUGGC-CgCg -3' miRNA: 3'- gaGCGaGCUCCGGUGa-----GGGCCGaGgG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 99610 | 0.68 | 0.585276 |
Target: 5'- -gCGCUCGc-GCCGC-CUCGGC-CCCg -3' miRNA: 3'- gaGCGAGCucCGGUGaGGGCCGaGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 113931 | 0.69 | 0.575754 |
Target: 5'- -cCGCcgaggCGAcgGGCCGCUgCCgGGCUUCCu -3' miRNA: 3'- gaGCGa----GCU--CCGGUGA-GGgCCGAGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 30333 | 0.69 | 0.575754 |
Target: 5'- gUCGCcgaagUCGAuGGCCACcuUCCCGaGCgacaggCCCu -3' miRNA: 3'- gAGCG-----AGCU-CCGGUG--AGGGC-CGa-----GGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 22612 | 0.69 | 0.566267 |
Target: 5'- -aCGCUCGAgccgaucgGGCCGCUCgaGGCgCUCg -3' miRNA: 3'- gaGCGAGCU--------CCGGUGAGggCCGaGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 123566 | 0.69 | 0.566267 |
Target: 5'- uUCGCcuUCGAGcGCCACggccgccgCCCGuGCagcgUCCCg -3' miRNA: 3'- gAGCG--AGCUC-CGGUGa-------GGGC-CG----AGGG- -5' |
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10955 | 5' | -62 | NC_002794.1 | + | 68768 | 0.69 | 0.556822 |
Target: 5'- -cCGC-CGGGGCgCcggACgCCCGGCUCUCg -3' miRNA: 3'- gaGCGaGCUCCG-G---UGaGGGCCGAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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