miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10955 5' -62 NC_002794.1 + 6954 0.71 0.448298
Target:  5'- uCUCGguCUCG-GGCuCGCUCCCGcuCUCCCc -3'
miRNA:   3'- -GAGC--GAGCuCCG-GUGAGGGCc-GAGGG- -5'
10955 5' -62 NC_002794.1 + 13423 0.79 0.138342
Target:  5'- -aCGCUCuGGGuCCuCUCCUGGCUCCCg -3'
miRNA:   3'- gaGCGAGcUCC-GGuGAGGGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 13719 0.66 0.718858
Target:  5'- -gCGCUCGAccgugcGGacccacaCGCUCCCGGCcggCCg -3'
miRNA:   3'- gaGCGAGCU------CCg------GUGAGGGCCGa--GGg -5'
10955 5' -62 NC_002794.1 + 13860 0.68 0.613998
Target:  5'- gUCGC-CGccGCCGCgaCCCGGUUCuCCg -3'
miRNA:   3'- gAGCGaGCucCGGUGa-GGGCCGAG-GG- -5'
10955 5' -62 NC_002794.1 + 14485 0.66 0.746493
Target:  5'- gCUCGCuguUCGcGGCgGCggCCCGcGCUCgCg -3'
miRNA:   3'- -GAGCG---AGCuCCGgUGa-GGGC-CGAGgG- -5'
10955 5' -62 NC_002794.1 + 14765 0.66 0.718858
Target:  5'- --aGCcgUCGAGGCCGCUgaggCCGGCgaggCCg -3'
miRNA:   3'- gagCG--AGCUCCGGUGAg---GGCCGa---GGg -5'
10955 5' -62 NC_002794.1 + 17963 0.69 0.556822
Target:  5'- aCUCGCcCG-GGCCGUgagCCUGGCgCCCa -3'
miRNA:   3'- -GAGCGaGCuCCGGUGa--GGGCCGaGGG- -5'
10955 5' -62 NC_002794.1 + 21944 0.68 0.612078
Target:  5'- -gCGCUCGucgaaggccgucGGCCGCUCCCgcGGCgCCg -3'
miRNA:   3'- gaGCGAGCu-----------CCGGUGAGGG--CCGaGGg -5'
10955 5' -62 NC_002794.1 + 22612 0.69 0.566267
Target:  5'- -aCGCUCGAgccgaucgGGCCGCUCgaGGCgCUCg -3'
miRNA:   3'- gaGCGAGCU--------CCGGUGAGggCCGaGGG- -5'
10955 5' -62 NC_002794.1 + 30333 0.69 0.575754
Target:  5'- gUCGCcgaagUCGAuGGCCACcuUCCCGaGCgacaggCCCu -3'
miRNA:   3'- gAGCG-----AGCU-CCGGUG--AGGGC-CGa-----GGG- -5'
10955 5' -62 NC_002794.1 + 31611 0.73 0.359927
Target:  5'- --aGCUCGAacaGCCGCUCCCG-CUCCUc -3'
miRNA:   3'- gagCGAGCUc--CGGUGAGGGCcGAGGG- -5'
10955 5' -62 NC_002794.1 + 32498 0.69 0.538072
Target:  5'- -aUGCUCGAcGUC-UUgCCGGCUCCCg -3'
miRNA:   3'- gaGCGAGCUcCGGuGAgGGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 46203 0.68 0.613998
Target:  5'- gCUCGCUCGccGCCG-UUCCGGCcagCUCg -3'
miRNA:   3'- -GAGCGAGCucCGGUgAGGGCCGa--GGG- -5'
10955 5' -62 NC_002794.1 + 46236 0.67 0.652431
Target:  5'- gCUCGCUCGccGGCgGCUCgUCcGCUUCCu -3'
miRNA:   3'- -GAGCGAGCu-CCGgUGAG-GGcCGAGGG- -5'
10955 5' -62 NC_002794.1 + 47294 0.73 0.355469
Target:  5'- cCUCGCccCGAGGUCGguuuuuCUuccgaggguggggugCCCGGCUCCCg -3'
miRNA:   3'- -GAGCGa-GCUCCGGU------GA---------------GGGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 48300 0.68 0.585276
Target:  5'- --aGCUCGAGGCUcgaguccaccgGCUucgugcacacggCCCGGUacUCCCg -3'
miRNA:   3'- gagCGAGCUCCGG-----------UGA------------GGGCCG--AGGG- -5'
10955 5' -62 NC_002794.1 + 48909 0.73 0.352519
Target:  5'- --aGCUCGGGGCCGCUCCgCaGCgCCa -3'
miRNA:   3'- gagCGAGCUCCGGUGAGG-GcCGaGGg -5'
10955 5' -62 NC_002794.1 + 52792 0.67 0.642827
Target:  5'- -aCGCUCGA-GCCGCUCgucggacgCCGGCagCUCg -3'
miRNA:   3'- gaGCGAGCUcCGGUGAG--------GGCCGa-GGG- -5'
10955 5' -62 NC_002794.1 + 55415 0.68 0.623604
Target:  5'- --gGC-CGAGGCgAC-CCCGGCgUCCg -3'
miRNA:   3'- gagCGaGCUCCGgUGaGGGCCG-AGGg -5'
10955 5' -62 NC_002794.1 + 56904 0.69 0.556822
Target:  5'- -cCGCgCGuGGCCACgggcgCCgGGCUgCCg -3'
miRNA:   3'- gaGCGaGCuCCGGUGa----GGgCCGAgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.