miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10955 5' -62 NC_002794.1 + 58010 0.73 0.359927
Target:  5'- gUCGCcgcCGGGGCCGC-CgCCGGCgaaCCCg -3'
miRNA:   3'- gAGCGa--GCUCCGGUGaG-GGCCGa--GGG- -5'
10955 5' -62 NC_002794.1 + 58437 0.68 0.585276
Target:  5'- -aCGC-CGAGGCCACgcugcgCCUGGC-CgCg -3'
miRNA:   3'- gaGCGaGCUCCGGUGa-----GGGCCGaGgG- -5'
10955 5' -62 NC_002794.1 + 59296 0.71 0.414754
Target:  5'- -cCGCUCGAcGCCGCgcagcgCCaCGGCgcgCCCg -3'
miRNA:   3'- gaGCGAGCUcCGGUGa-----GG-GCCGa--GGG- -5'
10955 5' -62 NC_002794.1 + 62744 0.67 0.642827
Target:  5'- -cCGCcCGcGGCCGuCUCgcuCCGGCUCCg -3'
miRNA:   3'- gaGCGaGCuCCGGU-GAG---GGCCGAGGg -5'
10955 5' -62 NC_002794.1 + 63910 0.66 0.717925
Target:  5'- gUCGCUCGc-GCCGCgaccgccgCCCGGCcggcgagUCUCg -3'
miRNA:   3'- gAGCGAGCucCGGUGa-------GGGCCG-------AGGG- -5'
10955 5' -62 NC_002794.1 + 65110 0.69 0.556822
Target:  5'- cCUCGUggucCGAGGUCGCgcgccugUCCGaGCUCCUc -3'
miRNA:   3'- -GAGCGa---GCUCCGGUGa------GGGC-CGAGGG- -5'
10955 5' -62 NC_002794.1 + 66247 0.66 0.728145
Target:  5'- -gCGCUUGcGGCgACccgUCCGGC-CCCg -3'
miRNA:   3'- gaGCGAGCuCCGgUGa--GGGCCGaGGG- -5'
10955 5' -62 NC_002794.1 + 66361 0.68 0.604404
Target:  5'- uUCGUcccagUCGucGCCGCUCUCgucgaacgcgGGCUCCCc -3'
miRNA:   3'- gAGCG-----AGCucCGGUGAGGG----------CCGAGGG- -5'
10955 5' -62 NC_002794.1 + 66441 0.66 0.718858
Target:  5'- gUCGUUUcuguccGCCGCUCCUccacccccagGGCUCCCg -3'
miRNA:   3'- gAGCGAGcuc---CGGUGAGGG----------CCGAGGG- -5'
10955 5' -62 NC_002794.1 + 67435 0.68 0.594828
Target:  5'- -gCGUgUCGc-GCCGCUUCgGGCUCCCg -3'
miRNA:   3'- gaGCG-AGCucCGGUGAGGgCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 67903 0.7 0.474416
Target:  5'- cCUCGCcCGucuCgGCUCCCGGCUCUCc -3'
miRNA:   3'- -GAGCGaGCuccGgUGAGGGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 68768 0.69 0.556822
Target:  5'- -cCGC-CGGGGCgCcggACgCCCGGCUCUCg -3'
miRNA:   3'- gaGCGaGCUCCG-G---UGaGGGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 68936 0.68 0.594828
Target:  5'- gUCGCcCGcGGGCCGCggCgCCGGCgccucUCCCu -3'
miRNA:   3'- gAGCGaGC-UCCGGUGa-G-GGCCG-----AGGG- -5'
10955 5' -62 NC_002794.1 + 69027 0.67 0.681128
Target:  5'- -aCGC-CGGcGCC-CUCgCCGGCUUCCu -3'
miRNA:   3'- gaGCGaGCUcCGGuGAG-GGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 69056 0.72 0.375067
Target:  5'- -cCGCUCGccacGGGCCGC-CgCCGGCcgCCCu -3'
miRNA:   3'- gaGCGAGC----UCCGGUGaG-GGCCGa-GGG- -5'
10955 5' -62 NC_002794.1 + 71742 0.68 0.604404
Target:  5'- -aCGC-CGaAGGCCGC-CgCCGGCUCUUc -3'
miRNA:   3'- gaGCGaGC-UCCGGUGaG-GGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 71878 0.68 0.623604
Target:  5'- -cCGCUCGAcgucguGGaCgCGCUCUCGcaGCUCCCg -3'
miRNA:   3'- gaGCGAGCU------CC-G-GUGAGGGC--CGAGGG- -5'
10955 5' -62 NC_002794.1 + 73220 0.7 0.492244
Target:  5'- cCUC-UUCGGGGCCua--CCGGCUCCUc -3'
miRNA:   3'- -GAGcGAGCUCCGGugagGGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 74021 0.68 0.604404
Target:  5'- -cUGUUCGGccGCCAC-CCCGGCcCCCg -3'
miRNA:   3'- gaGCGAGCUc-CGGUGaGGGCCGaGGG- -5'
10955 5' -62 NC_002794.1 + 78408 0.66 0.718858
Target:  5'- cCUCGCcgCGAcucuCCGCUCCCGGCgUCa- -3'
miRNA:   3'- -GAGCGa-GCUcc--GGUGAGGGCCG-AGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.