miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10955 5' -62 NC_002794.1 + 193980 0.68 0.633216
Target:  5'- -cCGC-CGcGGCCGCUaccgccgccCCCGGCUUCg -3'
miRNA:   3'- gaGCGaGCuCCGGUGA---------GGGCCGAGGg -5'
10955 5' -62 NC_002794.1 + 193774 0.67 0.675408
Target:  5'- gCUCGCUCGc--CCGCUCgaucgcccgacgacgCCGGCgCCCg -3'
miRNA:   3'- -GAGCGAGCuccGGUGAG---------------GGCCGaGGG- -5'
10955 5' -62 NC_002794.1 + 191796 0.66 0.737359
Target:  5'- uUCGCUCGAccgcccgcucGGCCGCUCgaGGa--CCg -3'
miRNA:   3'- gAGCGAGCU----------CCGGUGAGggCCgagGG- -5'
10955 5' -62 NC_002794.1 + 191188 0.66 0.737359
Target:  5'- -gCGCUCGcccGGCCGCccgCCCGcucgcucgcucGCUCUCu -3'
miRNA:   3'- gaGCGAGCu--CCGGUGa--GGGC-----------CGAGGG- -5'
10955 5' -62 NC_002794.1 + 189519 0.67 0.690632
Target:  5'- gUCGCggaucagCGGGuGCCGCUCCCaGUcgaUCCa -3'
miRNA:   3'- gAGCGa------GCUC-CGGUGAGGGcCG---AGGg -5'
10955 5' -62 NC_002794.1 + 187897 0.66 0.728145
Target:  5'- uCUCGCgCGGuGCCGCUCgCCcgccgGGC-CCCg -3'
miRNA:   3'- -GAGCGaGCUcCGGUGAG-GG-----CCGaGGG- -5'
10955 5' -62 NC_002794.1 + 186105 0.66 0.700094
Target:  5'- gUCGC-CGucGCCGC-CgCCGGgUCCCc -3'
miRNA:   3'- gAGCGaGCucCGGUGaG-GGCCgAGGG- -5'
10955 5' -62 NC_002794.1 + 186001 0.67 0.642827
Target:  5'- -cCGC-CGGGcuccGCCGCUCCgGGCccgggCCCg -3'
miRNA:   3'- gaGCGaGCUC----CGGUGAGGgCCGa----GGG- -5'
10955 5' -62 NC_002794.1 + 185947 0.71 0.414754
Target:  5'- --gGCUCGcGGCCGCgCCCGuuUCCCu -3'
miRNA:   3'- gagCGAGCuCCGGUGaGGGCcgAGGG- -5'
10955 5' -62 NC_002794.1 + 184191 0.76 0.237822
Target:  5'- -gCGCccggCGAGGcCCGCUCCCGcccccgaaccaGCUCCCg -3'
miRNA:   3'- gaGCGa---GCUCC-GGUGAGGGC-----------CGAGGG- -5'
10955 5' -62 NC_002794.1 + 183120 0.67 0.652431
Target:  5'- -gUGUUCGGcGGCgGCUCCCGuacgcgcaGCUCCg -3'
miRNA:   3'- gaGCGAGCU-CCGgUGAGGGC--------CGAGGg -5'
10955 5' -62 NC_002794.1 + 180863 0.68 0.594828
Target:  5'- cCUCGUcgGAGGCgGCggaUCCGGCgcgCCCg -3'
miRNA:   3'- -GAGCGagCUCCGgUGa--GGGCCGa--GGG- -5'
10955 5' -62 NC_002794.1 + 180679 0.8 0.119522
Target:  5'- aCUCGCc---GGCCGCUCCCGGCgCCCg -3'
miRNA:   3'- -GAGCGagcuCCGGUGAGGGCCGaGGG- -5'
10955 5' -62 NC_002794.1 + 180605 0.69 0.556822
Target:  5'- cCUCGCgccgCG-GGCCACgacaCGGCggCCCa -3'
miRNA:   3'- -GAGCGa---GCuCCGGUGagg-GCCGa-GGG- -5'
10955 5' -62 NC_002794.1 + 156202 0.66 0.737359
Target:  5'- gUCGCcggUCGgaGGGCCggcgACUCCgccggCGGCUCCg -3'
miRNA:   3'- gAGCG---AGC--UCCGG----UGAGG-----GCCGAGGg -5'
10955 5' -62 NC_002794.1 + 154335 0.69 0.528779
Target:  5'- gUCGUccCGGGuGCCGCggCCGaGCUCCCg -3'
miRNA:   3'- gAGCGa-GCUC-CGGUGagGGC-CGAGGG- -5'
10955 5' -62 NC_002794.1 + 149685 0.67 0.671588
Target:  5'- -gCGCUCGAcuGGCCGCgggggccgCCUGGCgggugggCCg -3'
miRNA:   3'- gaGCGAGCU--CCGGUGa-------GGGCCGa------GGg -5'
10955 5' -62 NC_002794.1 + 146692 0.68 0.613998
Target:  5'- -gCGCUCGAGGCCgACUgCgGGagcugguggCCCu -3'
miRNA:   3'- gaGCGAGCUCCGG-UGAgGgCCga-------GGG- -5'
10955 5' -62 NC_002794.1 + 145568 0.7 0.465623
Target:  5'- uUCGCggaCGAGcGCCgacggagcgGCggCCGGCUCCCg -3'
miRNA:   3'- gAGCGa--GCUC-CGG---------UGagGGCCGAGGG- -5'
10955 5' -62 NC_002794.1 + 144167 0.7 0.492244
Target:  5'- -aCGCUCGuGGGCUAUcUgCGGCUCCUc -3'
miRNA:   3'- gaGCGAGC-UCCGGUGaGgGCCGAGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.