miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10956 3' -61 NC_002794.1 + 41221 0.66 0.773879
Target:  5'- cGGCCucCGGGGAUuccucccacgccgcgGCCGCCG-ACGCc -3'
miRNA:   3'- -CCGGucGUCCCUG---------------UGGCGGUgUGCGa -5'
10956 3' -61 NC_002794.1 + 46314 0.66 0.770298
Target:  5'- aGCgCGGCGGcgacGGCGCCGUCGC-CGCg -3'
miRNA:   3'- cCG-GUCGUCc---CUGUGGCGGUGuGCGa -5'
10956 3' -61 NC_002794.1 + 56273 0.66 0.770298
Target:  5'- gGGCCgagcAGCAGGcGGCAgaGCacgauGCGCGCg -3'
miRNA:   3'- -CCGG----UCGUCC-CUGUggCGg----UGUGCGa -5'
10956 3' -61 NC_002794.1 + 64401 0.66 0.770298
Target:  5'- cGGCCAG-AGGGcCACCGUCGuCAUccccaacgGCUu -3'
miRNA:   3'- -CCGGUCgUCCCuGUGGCGGU-GUG--------CGA- -5'
10956 3' -61 NC_002794.1 + 22426 0.66 0.770298
Target:  5'- -cCCAGUgucGGGGACACCGgucuggaCACuACGCa -3'
miRNA:   3'- ccGGUCG---UCCCUGUGGCg------GUG-UGCGa -5'
10956 3' -61 NC_002794.1 + 84066 0.66 0.770298
Target:  5'- -cCCAGCcGGaGACgacgACCGCCGCGcCGCc -3'
miRNA:   3'- ccGGUCGuCC-CUG----UGGCGGUGU-GCGa -5'
10956 3' -61 NC_002794.1 + 189458 0.66 0.770298
Target:  5'- cGGCCAGCAc--GCGCCgaaagGCCGCGgGCg -3'
miRNA:   3'- -CCGGUCGUcccUGUGG-----CGGUGUgCGa -5'
10956 3' -61 NC_002794.1 + 188794 0.66 0.770298
Target:  5'- cGGCCGGCcccgccgaGCGCCGuCCAgGCGCa -3'
miRNA:   3'- -CCGGUCGuccc----UGUGGC-GGUgUGCGa -5'
10956 3' -61 NC_002794.1 + 143497 0.66 0.767601
Target:  5'- uGGCC-GCGGGGcugcagaugaggaaGCGCaCGUCGCcCGCg -3'
miRNA:   3'- -CCGGuCGUCCC--------------UGUG-GCGGUGuGCGa -5'
10956 3' -61 NC_002794.1 + 18830 0.66 0.767601
Target:  5'- cGGCCGGCGcGGaggagaccucgagcGCGCCGUCGCcgauCGCc -3'
miRNA:   3'- -CCGGUCGUcCC--------------UGUGGCGGUGu---GCGa -5'
10956 3' -61 NC_002794.1 + 30988 0.66 0.761268
Target:  5'- cGGCgaCGGCGGGGuCuuCGCCGgACGUc -3'
miRNA:   3'- -CCG--GUCGUCCCuGugGCGGUgUGCGa -5'
10956 3' -61 NC_002794.1 + 187583 0.66 0.761268
Target:  5'- cGUCGGCGcGGcCGCCGUCGCgACGCc -3'
miRNA:   3'- cCGGUCGUcCCuGUGGCGGUG-UGCGa -5'
10956 3' -61 NC_002794.1 + 103592 0.66 0.761268
Target:  5'- cGGUCgGGCAGGcaGCGgCGgCACGCGCUc -3'
miRNA:   3'- -CCGG-UCGUCCc-UGUgGCgGUGUGCGA- -5'
10956 3' -61 NC_002794.1 + 32698 0.66 0.761268
Target:  5'- aGGCgucGCGGGcGACucGCCGCCACcCGUc -3'
miRNA:   3'- -CCGgu-CGUCC-CUG--UGGCGGUGuGCGa -5'
10956 3' -61 NC_002794.1 + 16338 0.66 0.761268
Target:  5'- uGGCCGGCAccGACGacgucggCGCCACcCGCa -3'
miRNA:   3'- -CCGGUCGUccCUGUg------GCGGUGuGCGa -5'
10956 3' -61 NC_002794.1 + 37765 0.66 0.761268
Target:  5'- cGCCGGCGGGaGCgGCCgucgucgucgGCCGCAgGCg -3'
miRNA:   3'- cCGGUCGUCCcUG-UGG----------CGGUGUgCGa -5'
10956 3' -61 NC_002794.1 + 13115 0.66 0.76036
Target:  5'- -uUCGGCGGGGuCGCCGCgCGgcucgcuCGCGCg -3'
miRNA:   3'- ccGGUCGUCCCuGUGGCG-GU-------GUGCGa -5'
10956 3' -61 NC_002794.1 + 179716 0.66 0.758539
Target:  5'- cGCCGGCGGcuaccugagauagcGGAgCACCGUCGucaccCACGCg -3'
miRNA:   3'- cCGGUCGUC--------------CCU-GUGGCGGU-----GUGCGa -5'
10956 3' -61 NC_002794.1 + 118652 0.66 0.752134
Target:  5'- cGGCCAGCucguccguGGGcgcGACGCCcgcgGCCGC-CGCc -3'
miRNA:   3'- -CCGGUCG--------UCC---CUGUGG----CGGUGuGCGa -5'
10956 3' -61 NC_002794.1 + 143717 0.66 0.752134
Target:  5'- gGGCCccGGCGGGcGucguccuCGcCCGCCGgACGCg -3'
miRNA:   3'- -CCGG--UCGUCC-Cu------GU-GGCGGUgUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.