miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10956 5' -55.6 NC_002794.1 + 103403 0.66 0.966613
Target:  5'- aGGGGCaccacgUCGGGcAGcgcCGCGUGCACGAu -3'
miRNA:   3'- -CCUCG------GGCCUcUCau-GCGCAUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 92328 0.66 0.966613
Target:  5'- gGGGGCCCGGGcGGGcgGCucgGCGUcaACGuCGAc -3'
miRNA:   3'- -CCUCGGGCCU-CUCa-UG---CGCA--UGU-GCU- -5'
10956 5' -55.6 NC_002794.1 + 80022 0.66 0.965994
Target:  5'- aGGAGgCCGGGGAGaccacuCGCcgacagugccgGCGCGAg -3'
miRNA:   3'- -CCUCgGGCCUCUCau----GCGca---------UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 114508 0.66 0.963438
Target:  5'- cGGAccGuCCCGGAgcGAGUcgagcggcagccGCGCGagcUGCGCGAg -3'
miRNA:   3'- -CCU--C-GGGCCU--CUCA------------UGCGC---AUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 182450 0.66 0.963438
Target:  5'- -cGGUCuCGGAGAGcgcgGCG-GUGCGCGGc -3'
miRNA:   3'- ccUCGG-GCCUCUCa---UGCgCAUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 115444 0.66 0.960058
Target:  5'- aGGAGCagcuggucgagaUCGGAGAG-GCGgGgACGCGGg -3'
miRNA:   3'- -CCUCG------------GGCCUCUCaUGCgCaUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 41118 0.66 0.960058
Target:  5'- aGGGUCUGGAaauAGUACGgGUGuCGCGGg -3'
miRNA:   3'- cCUCGGGCCUc--UCAUGCgCAU-GUGCU- -5'
10956 5' -55.6 NC_002794.1 + 124163 0.66 0.956469
Target:  5'- cGGGGCCCGG-GAGa--GCGU-CGgGGa -3'
miRNA:   3'- -CCUCGGGCCuCUCaugCGCAuGUgCU- -5'
10956 5' -55.6 NC_002794.1 + 182498 0.66 0.952666
Target:  5'- aGGGG-CCGGucaGGUACGCGUA-GCGGa -3'
miRNA:   3'- -CCUCgGGCCuc-UCAUGCGCAUgUGCU- -5'
10956 5' -55.6 NC_002794.1 + 135 0.66 0.952666
Target:  5'- cGGAGCCCGGgaccgccgcAGGG-GCGCaccaGCACGc -3'
miRNA:   3'- -CCUCGGGCC---------UCUCaUGCGca--UGUGCu -5'
10956 5' -55.6 NC_002794.1 + 183547 0.66 0.952666
Target:  5'- --cGCCCGGGGAcacUGCGCGccgagccgccgACACGGg -3'
miRNA:   3'- ccuCGGGCCUCUc--AUGCGCa----------UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 118701 0.66 0.952666
Target:  5'- --cGCCCaGGAGcgcaugauggccAGcUGCGCGUACugGGc -3'
miRNA:   3'- ccuCGGG-CCUC------------UC-AUGCGCAUGugCU- -5'
10956 5' -55.6 NC_002794.1 + 126388 0.67 0.944407
Target:  5'- cGGGGCCugcgCGGcGGcGUGCGCGgcgguCGCGAu -3'
miRNA:   3'- -CCUCGG----GCCuCU-CAUGCGCau---GUGCU- -5'
10956 5' -55.6 NC_002794.1 + 185219 0.67 0.939944
Target:  5'- --cGCCgCGGAGAGU-CGCGccgaccgccgcGCACGAg -3'
miRNA:   3'- ccuCGG-GCCUCUCAuGCGCa----------UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 137013 0.67 0.939944
Target:  5'- aGGAGCCCGGGGAucAgGUucagGUGCucguCGAu -3'
miRNA:   3'- -CCUCGGGCCUCUcaUgCG----CAUGu---GCU- -5'
10956 5' -55.6 NC_002794.1 + 30023 0.67 0.939944
Target:  5'- aGGA-CCUggaGGAGAGaGCGCGUGaACGAc -3'
miRNA:   3'- -CCUcGGG---CCUCUCaUGCGCAUgUGCU- -5'
10956 5' -55.6 NC_002794.1 + 156949 0.67 0.937159
Target:  5'- cGGGGCCuCGGAGAugauuggccgaggauGUcACGCGUGC-Cu- -3'
miRNA:   3'- -CCUCGG-GCCUCU---------------CA-UGCGCAUGuGcu -5'
10956 5' -55.6 NC_002794.1 + 120659 0.67 0.935257
Target:  5'- cGGGGCgaGGuGAuGUACGUGUAUugGc -3'
miRNA:   3'- -CCUCGggCCuCU-CAUGCGCAUGugCu -5'
10956 5' -55.6 NC_002794.1 + 8628 0.67 0.935257
Target:  5'- cGGAGCgCGGuggaAGAcGUGCGCGccaaGCugGGg -3'
miRNA:   3'- -CCUCGgGCC----UCU-CAUGCGCa---UGugCU- -5'
10956 5' -55.6 NC_002794.1 + 127683 0.67 0.930344
Target:  5'- cGAGCCCGGucGGGgcgACGUGggugggACAgGAg -3'
miRNA:   3'- cCUCGGGCCu-CUCa--UGCGCa-----UGUgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.