Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10956 | 5' | -55.6 | NC_002794.1 | + | 185219 | 0.67 | 0.939944 |
Target: 5'- --cGCCgCGGAGAGU-CGCGccgaccgccgcGCACGAg -3' miRNA: 3'- ccuCGG-GCCUCUCAuGCGCa----------UGUGCU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 126388 | 0.67 | 0.944407 |
Target: 5'- cGGGGCCugcgCGGcGGcGUGCGCGgcgguCGCGAu -3' miRNA: 3'- -CCUCGG----GCCuCU-CAUGCGCau---GUGCU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 130004 | 0.68 | 0.88899 |
Target: 5'- -cGGcCCCGGAGcGUGCGgGUcggccucGCGCGAg -3' miRNA: 3'- ccUC-GGGCCUCuCAUGCgCA-------UGUGCU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 116033 | 0.68 | 0.88965 |
Target: 5'- cGGGGaCCGGAGAGgagaGCGCaGgggggaGCGCGAc -3' miRNA: 3'- -CCUCgGGCCUCUCa---UGCG-Ca-----UGUGCU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 158742 | 0.68 | 0.90843 |
Target: 5'- -cGGCCCGGGuAGUGUGCGcGCACGu -3' miRNA: 3'- ccUCGGGCCUcUCAUGCGCaUGUGCu -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 54717 | 0.68 | 0.903004 |
Target: 5'- cGAGCCgCGGAuguugacguucagcGAGUugGUGUccguggcgucguucgACACGAa -3' miRNA: 3'- cCUCGG-GCCU--------------CUCAugCGCA---------------UGUGCU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 106882 | 0.68 | 0.914247 |
Target: 5'- -cGGCCCGGAcaacgaauugGAGUACgagGCGcugcUGCGCGAg -3' miRNA: 3'- ccUCGGGCCU----------CUCAUG---CGC----AUGUGCU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 106951 | 0.69 | 0.846417 |
Target: 5'- cGGcGCCUGGAGAc-ACGCGUcgccucGCGCGGc -3' miRNA: 3'- -CCuCGGGCCUCUcaUGCGCA------UGUGCU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 35167 | 0.69 | 0.861626 |
Target: 5'- aGGAGCaCCGcGcGGAGUGCGagugcaacccguCGUACAUGGg -3' miRNA: 3'- -CCUCG-GGC-C-UCUCAUGC------------GCAUGUGCU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 105549 | 0.69 | 0.868939 |
Target: 5'- cGGcGGCUCGGgcgaacggauAGGGUGCGCGUagaGCAgGAg -3' miRNA: 3'- -CC-UCGGGCC----------UCUCAUGCGCA---UGUgCU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 181639 | 0.69 | 0.864575 |
Target: 5'- cGGAGCCCGGgcuccgggaAGaAaaccgcgguguacacGUugGUGUGCGCGGa -3' miRNA: 3'- -CCUCGGGCC---------UC-U---------------CAugCGCAUGUGCU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 176974 | 0.69 | 0.882956 |
Target: 5'- cGGGuauCCCGG-GAGUACcaGCGgggACACGAg -3' miRNA: 3'- -CCUc--GGGCCuCUCAUG--CGCa--UGUGCU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 99582 | 0.69 | 0.876051 |
Target: 5'- gGGGGUgCGGAGGGcGCGgCGgcgGCGCGc -3' miRNA: 3'- -CCUCGgGCCUCUCaUGC-GCa--UGUGCu -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 149608 | 0.7 | 0.805289 |
Target: 5'- aGGAGCCCccgacGGGGAcGUgggacGCGCGaUACGCGu -3' miRNA: 3'- -CCUCGGG-----CCUCU-CA-----UGCGC-AUGUGCu -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 122967 | 0.7 | 0.830471 |
Target: 5'- uGAGCCUGGGGuggcuGUACGCGcGCcugguGCGGg -3' miRNA: 3'- cCUCGGGCCUCu----CAUGCGCaUG-----UGCU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 115898 | 0.71 | 0.76967 |
Target: 5'- cGGAGCgCGGGGGGUuCGUGggguggacuugGCGCGGc -3' miRNA: 3'- -CCUCGgGCCUCUCAuGCGCa----------UGUGCU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 98285 | 0.71 | 0.77877 |
Target: 5'- cGGcGCaCCGGGGAG-AUGC-UGCACGAg -3' miRNA: 3'- -CCuCG-GGCCUCUCaUGCGcAUGUGCU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 136388 | 0.71 | 0.787745 |
Target: 5'- uGAGCaCCGGcuccGGGUcGCGCGUGCGCuGAa -3' miRNA: 3'- cCUCG-GGCCu---CUCA-UGCGCAUGUG-CU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 44141 | 0.72 | 0.722599 |
Target: 5'- aGGGCCCGcucgaGAGaAGUGCaCGUGCACGGc -3' miRNA: 3'- cCUCGGGC-----CUC-UCAUGcGCAUGUGCU- -5' |
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10956 | 5' | -55.6 | NC_002794.1 | + | 117207 | 0.72 | 0.716806 |
Target: 5'- cGGGCCCGGGcGgcuccggccgcgucaGGgcgaccgACGCGUGCACGAa -3' miRNA: 3'- cCUCGGGCCU-C---------------UCa------UGCGCAUGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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