miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10956 5' -55.6 NC_002794.1 + 184497 0.67 0.925205
Target:  5'- cGGAcGCCCGGGcggcgcGGGccccGCGCGcgGCGCGGg -3'
miRNA:   3'- -CCU-CGGGCCU------CUCa---UGCGCa-UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 81609 0.67 0.919839
Target:  5'- cGGAGUCgCGGAcGAGcACGCGUucCGCa- -3'
miRNA:   3'- -CCUCGG-GCCU-CUCaUGCGCAu-GUGcu -5'
10956 5' -55.6 NC_002794.1 + 106882 0.68 0.914247
Target:  5'- -cGGCCCGGAcaacgaauugGAGUACgagGCGcugcUGCGCGAg -3'
miRNA:   3'- ccUCGGGCCU----------CUCAUG---CGC----AUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 158742 0.68 0.90843
Target:  5'- -cGGCCCGGGuAGUGUGCGcGCACGu -3'
miRNA:   3'- ccUCGGGCCUcUCAUGCGCaUGUGCu -5'
10956 5' -55.6 NC_002794.1 + 54717 0.68 0.903004
Target:  5'- cGAGCCgCGGAuguugacguucagcGAGUugGUGUccguggcgucguucgACACGAa -3'
miRNA:   3'- cCUCGG-GCCU--------------CUCAugCGCA---------------UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 116033 0.68 0.88965
Target:  5'- cGGGGaCCGGAGAGgagaGCGCaGgggggaGCGCGAc -3'
miRNA:   3'- -CCUCgGGCCUCUCa---UGCG-Ca-----UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 130004 0.68 0.88899
Target:  5'- -cGGcCCCGGAGcGUGCGgGUcggccucGCGCGAg -3'
miRNA:   3'- ccUC-GGGCCUCuCAUGCgCA-------UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 176974 0.69 0.882956
Target:  5'- cGGGuauCCCGG-GAGUACcaGCGgggACACGAg -3'
miRNA:   3'- -CCUc--GGGCCuCUCAUG--CGCa--UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 99582 0.69 0.876051
Target:  5'- gGGGGUgCGGAGGGcGCGgCGgcgGCGCGc -3'
miRNA:   3'- -CCUCGgGCCUCUCaUGC-GCa--UGUGCu -5'
10956 5' -55.6 NC_002794.1 + 105549 0.69 0.868939
Target:  5'- cGGcGGCUCGGgcgaacggauAGGGUGCGCGUagaGCAgGAg -3'
miRNA:   3'- -CC-UCGGGCC----------UCUCAUGCGCA---UGUgCU- -5'
10956 5' -55.6 NC_002794.1 + 181639 0.69 0.864575
Target:  5'- cGGAGCCCGGgcuccgggaAGaAaaccgcgguguacacGUugGUGUGCGCGGa -3'
miRNA:   3'- -CCUCGGGCC---------UC-U---------------CAugCGCAUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 35167 0.69 0.861626
Target:  5'- aGGAGCaCCGcGcGGAGUGCGagugcaacccguCGUACAUGGg -3'
miRNA:   3'- -CCUCG-GGC-C-UCUCAUGC------------GCAUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 106951 0.69 0.846417
Target:  5'- cGGcGCCUGGAGAc-ACGCGUcgccucGCGCGGc -3'
miRNA:   3'- -CCuCGGGCCUCUcaUGCGCA------UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 122967 0.7 0.830471
Target:  5'- uGAGCCUGGGGuggcuGUACGCGcGCcugguGCGGg -3'
miRNA:   3'- cCUCGGGCCUCu----CAUGCGCaUG-----UGCU- -5'
10956 5' -55.6 NC_002794.1 + 149608 0.7 0.805289
Target:  5'- aGGAGCCCccgacGGGGAcGUgggacGCGCGaUACGCGu -3'
miRNA:   3'- -CCUCGGG-----CCUCU-CA-----UGCGC-AUGUGCu -5'
10956 5' -55.6 NC_002794.1 + 136388 0.71 0.787745
Target:  5'- uGAGCaCCGGcuccGGGUcGCGCGUGCGCuGAa -3'
miRNA:   3'- cCUCG-GGCCu---CUCA-UGCGCAUGUG-CU- -5'
10956 5' -55.6 NC_002794.1 + 98285 0.71 0.77877
Target:  5'- cGGcGCaCCGGGGAG-AUGC-UGCACGAg -3'
miRNA:   3'- -CCuCG-GGCCUCUCaUGCGcAUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 115898 0.71 0.76967
Target:  5'- cGGAGCgCGGGGGGUuCGUGggguggacuugGCGCGGc -3'
miRNA:   3'- -CCUCGgGCCUCUCAuGCGCa----------UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 44141 0.72 0.722599
Target:  5'- aGGGCCCGcucgaGAGaAGUGCaCGUGCACGGc -3'
miRNA:   3'- cCUCGGGC-----CUC-UCAUGcGCAUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 117207 0.72 0.716806
Target:  5'- cGGGCCCGGGcGgcuccggccgcgucaGGgcgaccgACGCGUGCACGAa -3'
miRNA:   3'- cCUCGGGCCU-C---------------UCa------UGCGCAUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.