miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10956 5' -55.6 NC_002794.1 + 135 0.66 0.952666
Target:  5'- cGGAGCCCGGgaccgccgcAGGG-GCGCaccaGCACGc -3'
miRNA:   3'- -CCUCGGGCC---------UCUCaUGCGca--UGUGCu -5'
10956 5' -55.6 NC_002794.1 + 8628 0.67 0.935257
Target:  5'- cGGAGCgCGGuggaAGAcGUGCGCGccaaGCugGGg -3'
miRNA:   3'- -CCUCGgGCC----UCU-CAUGCGCa---UGugCU- -5'
10956 5' -55.6 NC_002794.1 + 23897 0.76 0.525744
Target:  5'- aGGGCCCGGGagccGAGUGCagcaGCGUGgGCGAg -3'
miRNA:   3'- cCUCGGGCCU----CUCAUG----CGCAUgUGCU- -5'
10956 5' -55.6 NC_002794.1 + 30023 0.67 0.939944
Target:  5'- aGGA-CCUggaGGAGAGaGCGCGUGaACGAc -3'
miRNA:   3'- -CCUcGGG---CCUCUCaUGCGCAUgUGCU- -5'
10956 5' -55.6 NC_002794.1 + 35167 0.69 0.861626
Target:  5'- aGGAGCaCCGcGcGGAGUGCGagugcaacccguCGUACAUGGg -3'
miRNA:   3'- -CCUCG-GGC-C-UCUCAUGC------------GCAUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 41118 0.66 0.960058
Target:  5'- aGGGUCUGGAaauAGUACGgGUGuCGCGGg -3'
miRNA:   3'- cCUCGGGCCUc--UCAUGCgCAU-GUGCU- -5'
10956 5' -55.6 NC_002794.1 + 44141 0.72 0.722599
Target:  5'- aGGGCCCGcucgaGAGaAGUGCaCGUGCACGGc -3'
miRNA:   3'- cCUCGGGC-----CUC-UCAUGcGCAUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 54717 0.68 0.903004
Target:  5'- cGAGCCgCGGAuguugacguucagcGAGUugGUGUccguggcgucguucgACACGAa -3'
miRNA:   3'- cCUCGG-GCCU--------------CUCAugCGCA---------------UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 80022 0.66 0.965994
Target:  5'- aGGAGgCCGGGGAGaccacuCGCcgacagugccgGCGCGAg -3'
miRNA:   3'- -CCUCgGGCCUCUCau----GCGca---------UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 81609 0.67 0.919839
Target:  5'- cGGAGUCgCGGAcGAGcACGCGUucCGCa- -3'
miRNA:   3'- -CCUCGG-GCCU-CUCaUGCGCAu-GUGcu -5'
10956 5' -55.6 NC_002794.1 + 92328 0.66 0.966613
Target:  5'- gGGGGCCCGGGcGGGcgGCucgGCGUcaACGuCGAc -3'
miRNA:   3'- -CCUCGGGCCU-CUCa-UG---CGCA--UGU-GCU- -5'
10956 5' -55.6 NC_002794.1 + 98285 0.71 0.77877
Target:  5'- cGGcGCaCCGGGGAG-AUGC-UGCACGAg -3'
miRNA:   3'- -CCuCG-GGCCUCUCaUGCGcAUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 99582 0.69 0.876051
Target:  5'- gGGGGUgCGGAGGGcGCGgCGgcgGCGCGc -3'
miRNA:   3'- -CCUCGgGCCUCUCaUGC-GCa--UGUGCu -5'
10956 5' -55.6 NC_002794.1 + 103403 0.66 0.966613
Target:  5'- aGGGGCaccacgUCGGGcAGcgcCGCGUGCACGAu -3'
miRNA:   3'- -CCUCG------GGCCUcUCau-GCGCAUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 104460 0.72 0.703196
Target:  5'- cGAGCCCGGGcg--GCGUGUGCAgGAu -3'
miRNA:   3'- cCUCGGGCCUcucaUGCGCAUGUgCU- -5'
10956 5' -55.6 NC_002794.1 + 105549 0.69 0.868939
Target:  5'- cGGcGGCUCGGgcgaacggauAGGGUGCGCGUagaGCAgGAg -3'
miRNA:   3'- -CC-UCGGGCC----------UCUCAUGCGCA---UGUgCU- -5'
10956 5' -55.6 NC_002794.1 + 106882 0.68 0.914247
Target:  5'- -cGGCCCGGAcaacgaauugGAGUACgagGCGcugcUGCGCGAg -3'
miRNA:   3'- ccUCGGGCCU----------CUCAUG---CGC----AUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 106951 0.69 0.846417
Target:  5'- cGGcGCCUGGAGAc-ACGCGUcgccucGCGCGGc -3'
miRNA:   3'- -CCuCGGGCCUCUcaUGCGCA------UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 114508 0.66 0.963438
Target:  5'- cGGAccGuCCCGGAgcGAGUcgagcggcagccGCGCGagcUGCGCGAg -3'
miRNA:   3'- -CCU--C-GGGCCU--CUCA------------UGCGC---AUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 115444 0.66 0.960058
Target:  5'- aGGAGCagcuggucgagaUCGGAGAG-GCGgGgACGCGGg -3'
miRNA:   3'- -CCUCG------------GGCCUCUCaUGCgCaUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.