miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10956 5' -55.6 NC_002794.1 + 115898 0.71 0.76967
Target:  5'- cGGAGCgCGGGGGGUuCGUGggguggacuugGCGCGGc -3'
miRNA:   3'- -CCUCGgGCCUCUCAuGCGCa----------UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 116033 0.68 0.88965
Target:  5'- cGGGGaCCGGAGAGgagaGCGCaGgggggaGCGCGAc -3'
miRNA:   3'- -CCUCgGGCCUCUCa---UGCG-Ca-----UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 117207 0.72 0.716806
Target:  5'- cGGGCCCGGGcGgcuccggccgcgucaGGgcgaccgACGCGUGCACGAa -3'
miRNA:   3'- cCUCGGGCCU-C---------------UCa------UGCGCAUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 118701 0.66 0.952666
Target:  5'- --cGCCCaGGAGcgcaugauggccAGcUGCGCGUACugGGc -3'
miRNA:   3'- ccuCGGG-CCUC------------UC-AUGCGCAUGugCU- -5'
10956 5' -55.6 NC_002794.1 + 120659 0.67 0.935257
Target:  5'- cGGGGCgaGGuGAuGUACGUGUAUugGc -3'
miRNA:   3'- -CCUCGggCCuCU-CAUGCGCAUGugCu -5'
10956 5' -55.6 NC_002794.1 + 121031 0.74 0.614003
Target:  5'- aGAGgCCGGAGAGcgGCGCGUcgggcgcCGCGAa -3'
miRNA:   3'- cCUCgGGCCUCUCa-UGCGCAu------GUGCU- -5'
10956 5' -55.6 NC_002794.1 + 122967 0.7 0.830471
Target:  5'- uGAGCCUGGGGuggcuGUACGCGcGCcugguGCGGg -3'
miRNA:   3'- cCUCGGGCCUCu----CAUGCGCaUG-----UGCU- -5'
10956 5' -55.6 NC_002794.1 + 124163 0.66 0.956469
Target:  5'- cGGGGCCCGG-GAGa--GCGU-CGgGGa -3'
miRNA:   3'- -CCUCGGGCCuCUCaugCGCAuGUgCU- -5'
10956 5' -55.6 NC_002794.1 + 126388 0.67 0.944407
Target:  5'- cGGGGCCugcgCGGcGGcGUGCGCGgcgguCGCGAu -3'
miRNA:   3'- -CCUCGG----GCCuCU-CAUGCGCau---GUGCU- -5'
10956 5' -55.6 NC_002794.1 + 127683 0.67 0.930344
Target:  5'- cGAGCCCGGucGGGgcgACGUGggugggACAgGAg -3'
miRNA:   3'- cCUCGGGCCu-CUCa--UGCGCa-----UGUgCU- -5'
10956 5' -55.6 NC_002794.1 + 130004 0.68 0.88899
Target:  5'- -cGGcCCCGGAGcGUGCGgGUcggccucGCGCGAg -3'
miRNA:   3'- ccUC-GGGCCUCuCAUGCgCA-------UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 136388 0.71 0.787745
Target:  5'- uGAGCaCCGGcuccGGGUcGCGCGUGCGCuGAa -3'
miRNA:   3'- cCUCG-GGCCu---CUCA-UGCGCAUGUG-CU- -5'
10956 5' -55.6 NC_002794.1 + 137013 0.67 0.939944
Target:  5'- aGGAGCCCGGGGAucAgGUucagGUGCucguCGAu -3'
miRNA:   3'- -CCUCGGGCCUCUcaUgCG----CAUGu---GCU- -5'
10956 5' -55.6 NC_002794.1 + 149608 0.7 0.805289
Target:  5'- aGGAGCCCccgacGGGGAcGUgggacGCGCGaUACGCGu -3'
miRNA:   3'- -CCUCGGG-----CCUCU-CA-----UGCGC-AUGUGCu -5'
10956 5' -55.6 NC_002794.1 + 156949 0.67 0.937159
Target:  5'- cGGGGCCuCGGAGAugauuggccgaggauGUcACGCGUGC-Cu- -3'
miRNA:   3'- -CCUCGG-GCCUCU---------------CA-UGCGCAUGuGcu -5'
10956 5' -55.6 NC_002794.1 + 158742 0.68 0.90843
Target:  5'- -cGGCCCGGGuAGUGUGCGcGCACGu -3'
miRNA:   3'- ccUCGGGCCUcUCAUGCGCaUGUGCu -5'
10956 5' -55.6 NC_002794.1 + 176974 0.69 0.882956
Target:  5'- cGGGuauCCCGG-GAGUACcaGCGgggACACGAg -3'
miRNA:   3'- -CCUc--GGGCCuCUCAUG--CGCa--UGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 181639 0.69 0.864575
Target:  5'- cGGAGCCCGGgcuccgggaAGaAaaccgcgguguacacGUugGUGUGCGCGGa -3'
miRNA:   3'- -CCUCGGGCC---------UC-U---------------CAugCGCAUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 182450 0.66 0.963438
Target:  5'- -cGGUCuCGGAGAGcgcgGCG-GUGCGCGGc -3'
miRNA:   3'- ccUCGG-GCCUCUCa---UGCgCAUGUGCU- -5'
10956 5' -55.6 NC_002794.1 + 182498 0.66 0.952666
Target:  5'- aGGGG-CCGGucaGGUACGCGUA-GCGGa -3'
miRNA:   3'- -CCUCgGGCCuc-UCAUGCGCAUgUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.