miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10957 3' -58.2 NC_002794.1 + 78902 0.66 0.847256
Target:  5'- -gGCGCAACaGCacguacuccgucccgUCGggcacccGCCGCCGGCAGg -3'
miRNA:   3'- uaCGUGUUGcCG---------------AGC-------UGGUGGCCGUU- -5'
10957 3' -58.2 NC_002794.1 + 67768 0.66 0.844876
Target:  5'- -cGCgGCAACGccaGCUCgGACUcgGCCGGCGAu -3'
miRNA:   3'- uaCG-UGUUGC---CGAG-CUGG--UGGCCGUU- -5'
10957 3' -58.2 NC_002794.1 + 105659 0.66 0.844876
Target:  5'- -cGcCGCGGCGcGCUCcgcccgGACCGCCGGgAAc -3'
miRNA:   3'- uaC-GUGUUGC-CGAG------CUGGUGGCCgUU- -5'
10957 3' -58.2 NC_002794.1 + 137492 0.66 0.844876
Target:  5'- -aGCGCcACGG-UCGGuuccuCCGCCGGCGu -3'
miRNA:   3'- uaCGUGuUGCCgAGCU-----GGUGGCCGUu -5'
10957 3' -58.2 NC_002794.1 + 183677 0.66 0.844876
Target:  5'- -aGCGcCGACGGgUCGAgcgcCCGCCGcGCGc -3'
miRNA:   3'- uaCGU-GUUGCCgAGCU----GGUGGC-CGUu -5'
10957 3' -58.2 NC_002794.1 + 106039 0.66 0.840064
Target:  5'- -cGCugGacgcGCGGCugaacuucgucaacgUgGGCCGCCGGCAc -3'
miRNA:   3'- uaCGugU----UGCCG---------------AgCUGGUGGCCGUu -5'
10957 3' -58.2 NC_002794.1 + 43232 0.66 0.836819
Target:  5'- gAUGCgcuGCAGCGGCacCGGCCggaacGCCGGguGg -3'
miRNA:   3'- -UACG---UGUUGCCGa-GCUGG-----UGGCCguU- -5'
10957 3' -58.2 NC_002794.1 + 93809 0.66 0.836819
Target:  5'- ---gACAGCaGCUCGACCccgaGCUGGCGg -3'
miRNA:   3'- uacgUGUUGcCGAGCUGG----UGGCCGUu -5'
10957 3' -58.2 NC_002794.1 + 113526 0.66 0.836819
Target:  5'- -aGCucCGcCGGCUCGGCguCGCCGGCc- -3'
miRNA:   3'- uaCGu-GUuGCCGAGCUG--GUGGCCGuu -5'
10957 3' -58.2 NC_002794.1 + 106351 0.66 0.836819
Target:  5'- -nGguCGACGGCgggCGGgCGCCGGUu- -3'
miRNA:   3'- uaCguGUUGCCGa--GCUgGUGGCCGuu -5'
10957 3' -58.2 NC_002794.1 + 120125 0.66 0.836819
Target:  5'- -cGCGCGACGGC--GACCggggacggGCCGGUg- -3'
miRNA:   3'- uaCGUGUUGCCGagCUGG--------UGGCCGuu -5'
10957 3' -58.2 NC_002794.1 + 13805 0.66 0.836819
Target:  5'- --uCGCGACgGGCcCGGCCGgCGGCGAc -3'
miRNA:   3'- uacGUGUUG-CCGaGCUGGUgGCCGUU- -5'
10957 3' -58.2 NC_002794.1 + 12410 0.66 0.836819
Target:  5'- -cGCACGcggACGGCgCGcGCCgACUGGCAGc -3'
miRNA:   3'- uaCGUGU---UGCCGaGC-UGG-UGGCCGUU- -5'
10957 3' -58.2 NC_002794.1 + 188781 0.66 0.836819
Target:  5'- gGUGCAgcggUAGCGGC-CGGCCccGCCGaGCGc -3'
miRNA:   3'- -UACGU----GUUGCCGaGCUGG--UGGC-CGUu -5'
10957 3' -58.2 NC_002794.1 + 194955 0.66 0.836819
Target:  5'- -cGUcaGCAGCGGCaCGAaCGCCGGCu- -3'
miRNA:   3'- uaCG--UGUUGCCGaGCUgGUGGCCGuu -5'
10957 3' -58.2 NC_002794.1 + 34242 0.66 0.828579
Target:  5'- cUGCACGcGCGGCU--GCCGCCgcaGGCGGa -3'
miRNA:   3'- uACGUGU-UGCCGAgcUGGUGG---CCGUU- -5'
10957 3' -58.2 NC_002794.1 + 18231 0.66 0.828579
Target:  5'- -cGCACuauuagaaaAGCGcGCgCGGCCgACCGGCGAc -3'
miRNA:   3'- uaCGUG---------UUGC-CGaGCUGG-UGGCCGUU- -5'
10957 3' -58.2 NC_002794.1 + 151723 0.66 0.828579
Target:  5'- -cGCGCGAaGGacgucgUCGGCCGCCGGUc- -3'
miRNA:   3'- uaCGUGUUgCCg-----AGCUGGUGGCCGuu -5'
10957 3' -58.2 NC_002794.1 + 38496 0.66 0.828579
Target:  5'- -aGCGCGGCGGCgccggUCG-CCGCCGccuccGCGAu -3'
miRNA:   3'- uaCGUGUUGCCG-----AGCuGGUGGC-----CGUU- -5'
10957 3' -58.2 NC_002794.1 + 19465 0.66 0.828579
Target:  5'- -gGCgGCGGCGGCggGACCcGCCGGUc- -3'
miRNA:   3'- uaCG-UGUUGCCGagCUGG-UGGCCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.