miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10957 5' -57.6 NC_002794.1 + 113883 0.66 0.888202
Target:  5'- cGGCCGCggCGcGCGUCGGCgcggUCUGcAGGa -3'
miRNA:   3'- -UCGGCGaaGU-CGCAGUCG----AGGC-UCUg -5'
10957 5' -57.6 NC_002794.1 + 114714 0.66 0.888202
Target:  5'- cGGaCgGCggCGGCGgCGGCUCCGGGu- -3'
miRNA:   3'- -UC-GgCGaaGUCGCaGUCGAGGCUCug -5'
10957 5' -57.6 NC_002794.1 + 51243 0.66 0.888202
Target:  5'- cGGUCGCUUCuagaaGGCGUgggGGCgggCCGGGAg -3'
miRNA:   3'- -UCGGCGAAG-----UCGCAg--UCGa--GGCUCUg -5'
10957 5' -57.6 NC_002794.1 + 95765 0.66 0.888202
Target:  5'- gGGCgGCggCcGCGaCGGCggCCGGGGCg -3'
miRNA:   3'- -UCGgCGaaGuCGCaGUCGa-GGCUCUG- -5'
10957 5' -57.6 NC_002794.1 + 105438 0.66 0.888202
Target:  5'- cGCCGCgccggCGGCGcCGucguucugcccGUUCUGGGACg -3'
miRNA:   3'- uCGGCGaa---GUCGCaGU-----------CGAGGCUCUG- -5'
10957 5' -57.6 NC_002794.1 + 109521 0.66 0.888202
Target:  5'- cGGCCcgcGCUcguUCGGCGUCGGg-CCG-GGCg -3'
miRNA:   3'- -UCGG---CGA---AGUCGCAGUCgaGGCuCUG- -5'
10957 5' -57.6 NC_002794.1 + 191886 0.66 0.888202
Target:  5'- gGGCgGCggaGGCGggaUCGGCaCCGGGACc -3'
miRNA:   3'- -UCGgCGaagUCGC---AGUCGaGGCUCUG- -5'
10957 5' -57.6 NC_002794.1 + 57345 0.66 0.888202
Target:  5'- cAGCUGC-UCGaCGcCAGCUCCGAcagcauccucGACa -3'
miRNA:   3'- -UCGGCGaAGUcGCaGUCGAGGCU----------CUG- -5'
10957 5' -57.6 NC_002794.1 + 121155 0.66 0.887531
Target:  5'- aGGCUGCgaaGGCGUUcagaucggcagcgGGCUCCGcacGACg -3'
miRNA:   3'- -UCGGCGaagUCGCAG-------------UCGAGGCu--CUG- -5'
10957 5' -57.6 NC_002794.1 + 62152 0.66 0.881398
Target:  5'- cGCgCGCUUCuGCGUC---UUCGAGACc -3'
miRNA:   3'- uCG-GCGAAGuCGCAGucgAGGCUCUG- -5'
10957 5' -57.6 NC_002794.1 + 194749 0.66 0.881398
Target:  5'- cGCUGCagcacccaCGGCGaCuGCUCCGAGAa -3'
miRNA:   3'- uCGGCGaa------GUCGCaGuCGAGGCUCUg -5'
10957 5' -57.6 NC_002794.1 + 16919 0.66 0.881398
Target:  5'- gAGCCGCcgaCuGuCGUCGGCgCCGAGcCg -3'
miRNA:   3'- -UCGGCGaa-GuC-GCAGUCGaGGCUCuG- -5'
10957 5' -57.6 NC_002794.1 + 50714 0.66 0.881398
Target:  5'- cGCCGCcUC-GCGUUcGCcgcCCGGGGCg -3'
miRNA:   3'- uCGGCGaAGuCGCAGuCGa--GGCUCUG- -5'
10957 5' -57.6 NC_002794.1 + 48481 0.66 0.874381
Target:  5'- aAGCCGCcgggCAGCGcccacgacacguUCAGCgcCCGAucGACg -3'
miRNA:   3'- -UCGGCGaa--GUCGC------------AGUCGa-GGCU--CUG- -5'
10957 5' -57.6 NC_002794.1 + 62742 0.66 0.874381
Target:  5'- cGCCGCccgCGGcCGUCucGCUCCGGcuccGGCu -3'
miRNA:   3'- uCGGCGaa-GUC-GCAGu-CGAGGCU----CUG- -5'
10957 5' -57.6 NC_002794.1 + 118632 0.66 0.874381
Target:  5'- gAGCUGCUgcgccagcUCGGCGgcCAGCucgUCCGuGGGCg -3'
miRNA:   3'- -UCGGCGA--------AGUCGCa-GUCG---AGGC-UCUG- -5'
10957 5' -57.6 NC_002794.1 + 150005 0.66 0.874381
Target:  5'- cGCUGCUacgaCGGCcc--GCUCCGAGACc -3'
miRNA:   3'- uCGGCGAa---GUCGcaguCGAGGCUCUG- -5'
10957 5' -57.6 NC_002794.1 + 91780 0.66 0.874381
Target:  5'- gGGCUGCUgaaGGCGgugCAGUUCUGcaacGGGCu -3'
miRNA:   3'- -UCGGCGAag-UCGCa--GUCGAGGC----UCUG- -5'
10957 5' -57.6 NC_002794.1 + 180956 0.66 0.874381
Target:  5'- cGGCCGacgCGGacucCGUCGGggcgaacaaCUCCGAGACg -3'
miRNA:   3'- -UCGGCgaaGUC----GCAGUC---------GAGGCUCUG- -5'
10957 5' -57.6 NC_002794.1 + 32299 0.66 0.871515
Target:  5'- cGCCGCcgCGGCGgccgcgccggccgCGGC-CgGAGACa -3'
miRNA:   3'- uCGGCGaaGUCGCa------------GUCGaGgCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.