miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10958 3' -56.9 NC_002794.1 + 150315 0.66 0.921646
Target:  5'- uCAcCGGCCGCGUCuacgugcaGugGACGcacGGCUGu -3'
miRNA:   3'- -GUcGCCGGUGCAG--------UugCUGU---CCGACu -5'
10958 3' -56.9 NC_002794.1 + 50768 0.66 0.921646
Target:  5'- gGGCGGCgGCGaCGGCGcgucuCGGGCg-- -3'
miRNA:   3'- gUCGCCGgUGCaGUUGCu----GUCCGacu -5'
10958 3' -56.9 NC_002794.1 + 66018 0.66 0.921646
Target:  5'- aGGCGGCCGCGgucgucgccgUCGuCGuCGGGCcGGc -3'
miRNA:   3'- gUCGCCGGUGC----------AGUuGCuGUCCGaCU- -5'
10958 3' -56.9 NC_002794.1 + 142319 0.66 0.921646
Target:  5'- aGGCGGCgGCGcaGGCGGCggAGGCggcgGAg -3'
miRNA:   3'- gUCGCCGgUGCagUUGCUG--UCCGa---CU- -5'
10958 3' -56.9 NC_002794.1 + 93992 0.66 0.916089
Target:  5'- uCGGCGcggacGCCgGCGcCGGCGGCGGGCcGGc -3'
miRNA:   3'- -GUCGC-----CGG-UGCaGUUGCUGUCCGaCU- -5'
10958 3' -56.9 NC_002794.1 + 90674 0.66 0.914378
Target:  5'- gGGcCGGCCGCGUgGcuguucgugugcccGCGGCAGGacgaaUGGu -3'
miRNA:   3'- gUC-GCCGGUGCAgU--------------UGCUGUCCg----ACU- -5'
10958 3' -56.9 NC_002794.1 + 128160 0.66 0.910304
Target:  5'- aCGGCGGCuCGCGcCGcgGACGGGUcggUGAc -3'
miRNA:   3'- -GUCGCCG-GUGCaGUugCUGUCCG---ACU- -5'
10958 3' -56.9 NC_002794.1 + 34083 0.66 0.910304
Target:  5'- cCGGCGGCCGgG-CAGcCGuCGGGCg-- -3'
miRNA:   3'- -GUCGCCGGUgCaGUU-GCuGUCCGacu -5'
10958 3' -56.9 NC_002794.1 + 35734 0.66 0.908524
Target:  5'- cCGGCGGCCGCGcgucucacuggcugUcCAACGACGucgcGGCa-- -3'
miRNA:   3'- -GUCGCCGGUGC--------------A-GUUGCUGU----CCGacu -5'
10958 3' -56.9 NC_002794.1 + 82053 0.66 0.906723
Target:  5'- gCGGCGGCgGCGUCGuccuCGGCcucgccggcccucucGGGCa-- -3'
miRNA:   3'- -GUCGCCGgUGCAGUu---GCUG---------------UCCGacu -5'
10958 3' -56.9 NC_002794.1 + 49251 0.66 0.904291
Target:  5'- gGGCGcCCGCG-CAcccACGACGGGCg-- -3'
miRNA:   3'- gUCGCcGGUGCaGU---UGCUGUCCGacu -5'
10958 3' -56.9 NC_002794.1 + 80557 0.66 0.904291
Target:  5'- -cGCGGaCC-CGUuccgcgccgugcCGACGcACGGGCUGAc -3'
miRNA:   3'- guCGCC-GGuGCA------------GUUGC-UGUCCGACU- -5'
10958 3' -56.9 NC_002794.1 + 155632 0.66 0.904291
Target:  5'- aGGUGGCCAgGcgGAUGAUGGGuCUGAu -3'
miRNA:   3'- gUCGCCGGUgCagUUGCUGUCC-GACU- -5'
10958 3' -56.9 NC_002794.1 + 112111 0.66 0.904291
Target:  5'- -cGCGGCCGgGaCGACGGCgcGGGgaGGu -3'
miRNA:   3'- guCGCCGGUgCaGUUGCUG--UCCgaCU- -5'
10958 3' -56.9 NC_002794.1 + 58632 0.66 0.903678
Target:  5'- -uGCGccugaucGCCACG-CAgcuggGCGACGGGCUGc -3'
miRNA:   3'- guCGC-------CGGUGCaGU-----UGCUGUCCGACu -5'
10958 3' -56.9 NC_002794.1 + 182278 0.66 0.898054
Target:  5'- gAGCGGCCucccaugacgggGCGg-GugGACGGGCaGAc -3'
miRNA:   3'- gUCGCCGG------------UGCagUugCUGUCCGaCU- -5'
10958 3' -56.9 NC_002794.1 + 187063 0.66 0.898054
Target:  5'- -cGCGGCC-CGcCAgguGCcGCAGGCUGc -3'
miRNA:   3'- guCGCCGGuGCaGU---UGcUGUCCGACu -5'
10958 3' -56.9 NC_002794.1 + 112756 0.66 0.898054
Target:  5'- gCGGCGGCgGgGUCGGgGugAGGUcucgGAg -3'
miRNA:   3'- -GUCGCCGgUgCAGUUgCugUCCGa---CU- -5'
10958 3' -56.9 NC_002794.1 + 125223 0.66 0.898054
Target:  5'- -cGUGGuCCGCGUCAucaGCGACcacgAGGCg-- -3'
miRNA:   3'- guCGCC-GGUGCAGU---UGCUG----UCCGacu -5'
10958 3' -56.9 NC_002794.1 + 56167 0.66 0.89678
Target:  5'- gCAGCGGCCccggugcACGUagagCAccgggccGCGGCAGGCg-- -3'
miRNA:   3'- -GUCGCCGG-------UGCA----GU-------UGCUGUCCGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.