miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10958 5' -59.3 NC_002794.1 + 149691 0.66 0.842507
Target:  5'- gACUGGCcgcgggggccgccugGCGgGUGgGCCGCcugccUCGCu -3'
miRNA:   3'- aUGACCG---------------CGUgCACgCGGCGcu---AGCG- -5'
10958 5' -59.3 NC_002794.1 + 111620 0.66 0.840154
Target:  5'- gGCggGGcCGcCGCGgccgccgccggucggGCGCCGCGGcCGCg -3'
miRNA:   3'- aUGa-CC-GC-GUGCa--------------CGCGGCGCUaGCG- -5'
10958 5' -59.3 NC_002794.1 + 63017 0.66 0.839366
Target:  5'- gGCUGGaGCugGUGCucGCCuGCG--CGCa -3'
miRNA:   3'- aUGACCgCGugCACG--CGG-CGCuaGCG- -5'
10958 5' -59.3 NC_002794.1 + 37749 0.66 0.839366
Target:  5'- gGC-GGCgGCGCGgcgGCGCCgGCGGgaGCg -3'
miRNA:   3'- aUGaCCG-CGUGCa--CGCGG-CGCUagCG- -5'
10958 5' -59.3 NC_002794.1 + 44088 0.66 0.839366
Target:  5'- aUACcgGGCaGUAacgGUGCGCCGaCGAgCGCc -3'
miRNA:   3'- -AUGa-CCG-CGUg--CACGCGGC-GCUaGCG- -5'
10958 5' -59.3 NC_002794.1 + 58546 0.66 0.839366
Target:  5'- cGC-GGCGCGCGcgcugcugGCGCgcugCGCGAaCGCc -3'
miRNA:   3'- aUGaCCGCGUGCa-------CGCG----GCGCUaGCG- -5'
10958 5' -59.3 NC_002794.1 + 46322 0.66 0.839366
Target:  5'- gGCgacGGCGC-CGU-CGCCGCGGaCGg -3'
miRNA:   3'- aUGa--CCGCGuGCAcGCGGCGCUaGCg -5'
10958 5' -59.3 NC_002794.1 + 14510 0.66 0.839366
Target:  5'- cGCUcgcGGCGCuCGUgGCGCCGC--UCGg -3'
miRNA:   3'- aUGA---CCGCGuGCA-CGCGGCGcuAGCg -5'
10958 5' -59.3 NC_002794.1 + 187471 0.66 0.839366
Target:  5'- cGCUcGGCGCGCGccGgGCCGaggaCGAggccgCGCa -3'
miRNA:   3'- aUGA-CCGCGUGCa-CgCGGC----GCUa----GCG- -5'
10958 5' -59.3 NC_002794.1 + 114440 0.66 0.839366
Target:  5'- aGCUGcCGCACGUcGUGgUGCuGUCGCc -3'
miRNA:   3'- aUGACcGCGUGCA-CGCgGCGcUAGCG- -5'
10958 5' -59.3 NC_002794.1 + 66826 0.66 0.839366
Target:  5'- gGCgcccGGCGCGacucCGgGCGCCGCcGUCGg -3'
miRNA:   3'- aUGa---CCGCGU----GCaCGCGGCGcUAGCg -5'
10958 5' -59.3 NC_002794.1 + 89696 0.66 0.838576
Target:  5'- cGC-GGCGaauauaaACG-GCGCCGCGGUgccgaucCGCg -3'
miRNA:   3'- aUGaCCGCg------UGCaCGCGGCGCUA-------GCG- -5'
10958 5' -59.3 NC_002794.1 + 30935 0.66 0.834601
Target:  5'- gGCU-GCGCcCGccGCGCCGCGAgacaggcacgggaugUCGUg -3'
miRNA:   3'- aUGAcCGCGuGCa-CGCGGCGCU---------------AGCG- -5'
10958 5' -59.3 NC_002794.1 + 92440 0.66 0.834601
Target:  5'- cGCUGGcCGUGCG-GgGCCGCGcggacuucaugagCGCg -3'
miRNA:   3'- aUGACC-GCGUGCaCgCGGCGCua-----------GCG- -5'
10958 5' -59.3 NC_002794.1 + 18329 0.66 0.83139
Target:  5'- -uCUuGUGguUGUGCGUCGCGAUCcggGCg -3'
miRNA:   3'- auGAcCGCguGCACGCGGCGCUAG---CG- -5'
10958 5' -59.3 NC_002794.1 + 36914 0.66 0.83139
Target:  5'- cGC-GGCGC-CG-GCcCCGCGAcCGCg -3'
miRNA:   3'- aUGaCCGCGuGCaCGcGGCGCUaGCG- -5'
10958 5' -59.3 NC_002794.1 + 107094 0.66 0.83139
Target:  5'- gACgGGCGgGggUGUGuCGCUGCGAgccgCGCu -3'
miRNA:   3'- aUGaCCGCgU--GCAC-GCGGCGCUa---GCG- -5'
10958 5' -59.3 NC_002794.1 + 137990 0.66 0.83139
Target:  5'- cGCa-GCGCugGUGCaGCUGgGcgCGCa -3'
miRNA:   3'- aUGacCGCGugCACG-CGGCgCuaGCG- -5'
10958 5' -59.3 NC_002794.1 + 90715 0.66 0.83139
Target:  5'- --aUGGUGCgACGUGC-UCGCGGcccugUCGCu -3'
miRNA:   3'- augACCGCG-UGCACGcGGCGCU-----AGCG- -5'
10958 5' -59.3 NC_002794.1 + 35553 0.66 0.83139
Target:  5'- ---cGGCGCucGCGcGCGCgCGUGGUgGCc -3'
miRNA:   3'- augaCCGCG--UGCaCGCG-GCGCUAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.