miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10959 3' -63.4 NC_002794.1 + 186654 0.66 0.705369
Target:  5'- uCGGCCGCGCgCaccccguacacggcgCCCGCCaCGuccaggaucacgacGACGCGGg -3'
miRNA:   3'- -GCUGGCGCGgG---------------GGGUGG-GC--------------UUGCGCU- -5'
10959 3' -63.4 NC_002794.1 + 138737 0.66 0.704443
Target:  5'- uCGACgGgGUCCCCgGCCCuccgggggccGAGuCGCGGc -3'
miRNA:   3'- -GCUGgCgCGGGGGgUGGG----------CUU-GCGCU- -5'
10959 3' -63.4 NC_002794.1 + 79916 0.66 0.704443
Target:  5'- -uACCGCacgGCCCUggCC-CCCGAACGCc- -3'
miRNA:   3'- gcUGGCG---CGGGG--GGuGGGCUUGCGcu -5'
10959 3' -63.4 NC_002794.1 + 18622 0.66 0.704443
Target:  5'- cCGGCCGC-CCCUCCgacGCCCGcucCGCc- -3'
miRNA:   3'- -GCUGGCGcGGGGGG---UGGGCuu-GCGcu -5'
10959 3' -63.4 NC_002794.1 + 63512 0.66 0.704443
Target:  5'- uCGuCCGCgacGCCUCCCGCgCGAGcCGCc- -3'
miRNA:   3'- -GCuGGCG---CGGGGGGUGgGCUU-GCGcu -5'
10959 3' -63.4 NC_002794.1 + 82861 0.66 0.704443
Target:  5'- gCGACCGCGaCCgCgACCgCGAccguGCGCGc -3'
miRNA:   3'- -GCUGGCGCgGGgGgUGG-GCU----UGCGCu -5'
10959 3' -63.4 NC_002794.1 + 86899 0.66 0.704443
Target:  5'- cCGGCgGgGCCgCCgACCCGGugACGCc- -3'
miRNA:   3'- -GCUGgCgCGGgGGgUGGGCU--UGCGcu -5'
10959 3' -63.4 NC_002794.1 + 129812 0.66 0.704443
Target:  5'- gGACCGCGUCUgCCGCaucauCGCGGa -3'
miRNA:   3'- gCUGGCGCGGGgGGUGggcuuGCGCU- -5'
10959 3' -63.4 NC_002794.1 + 46121 0.66 0.704443
Target:  5'- cCGcCCGCGUcggcuCCCCCGUCCGAgucgGCGuCGAu -3'
miRNA:   3'- -GCuGGCGCG-----GGGGGUGGGCU----UGC-GCU- -5'
10959 3' -63.4 NC_002794.1 + 111628 0.66 0.704443
Target:  5'- -cGCCGCGgCCgCCGCCgguCGGGCGCc- -3'
miRNA:   3'- gcUGGCGCgGGgGGUGG---GCUUGCGcu -5'
10959 3' -63.4 NC_002794.1 + 181408 0.66 0.704443
Target:  5'- cCGGCCGcCGCCa-CCGCCaUGucCGCGAa -3'
miRNA:   3'- -GCUGGC-GCGGggGGUGG-GCuuGCGCU- -5'
10959 3' -63.4 NC_002794.1 + 59327 0.66 0.704443
Target:  5'- cCGACUuCGCCgCCCGCCaccACGCGc -3'
miRNA:   3'- -GCUGGcGCGGgGGGUGGgcuUGCGCu -5'
10959 3' -63.4 NC_002794.1 + 178857 0.66 0.704443
Target:  5'- gGACCGaGCCgCCCGCCCuuccGACuCGAu -3'
miRNA:   3'- gCUGGCgCGGgGGGUGGGc---UUGcGCU- -5'
10959 3' -63.4 NC_002794.1 + 192979 0.66 0.704443
Target:  5'- gGACCaggGCGCggucgCCCUCGCCCG-GCGUGu -3'
miRNA:   3'- gCUGG---CGCG-----GGGGGUGGGCuUGCGCu -5'
10959 3' -63.4 NC_002794.1 + 162056 0.66 0.695155
Target:  5'- cCGcACCGCGuaacaCCUCCCGCuuGuauauCGCGAu -3'
miRNA:   3'- -GC-UGGCGC-----GGGGGGUGggCuu---GCGCU- -5'
10959 3' -63.4 NC_002794.1 + 141568 0.66 0.695155
Target:  5'- gCGGCCGCGgCCUCCgugaucaugacGCCCGcguCGCc- -3'
miRNA:   3'- -GCUGGCGCgGGGGG-----------UGGGCuu-GCGcu -5'
10959 3' -63.4 NC_002794.1 + 49621 0.66 0.695155
Target:  5'- cCGGCgGCGCCUcgCCCGCCCcucuAACcgucgGCGAg -3'
miRNA:   3'- -GCUGgCGCGGG--GGGUGGGc---UUG-----CGCU- -5'
10959 3' -63.4 NC_002794.1 + 44287 0.66 0.695155
Target:  5'- aGuCCGCGCCCgCCgGgCCGGcgAgGCGGg -3'
miRNA:   3'- gCuGGCGCGGG-GGgUgGGCU--UgCGCU- -5'
10959 3' -63.4 NC_002794.1 + 30557 0.66 0.695155
Target:  5'- gGAuCCGCGCCCgCUCGuuCGucAGCGUGAc -3'
miRNA:   3'- gCU-GGCGCGGG-GGGUggGC--UUGCGCU- -5'
10959 3' -63.4 NC_002794.1 + 13476 0.66 0.695155
Target:  5'- -cACCGCuCCCCCCAgcgUCCGcuUGCGGc -3'
miRNA:   3'- gcUGGCGcGGGGGGU---GGGCuuGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.