miRNA display CGI


Results 1 - 20 of 344 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10959 5' -54.2 NC_002794.1 + 129917 0.66 0.980502
Target:  5'- gCACgCGAU--UCGCcagGCCGuGGCGACGGCg -3'
miRNA:   3'- -GUG-GCUGagAGCG---CGGU-UUGCUGUCG- -5'
10959 5' -54.2 NC_002794.1 + 31620 0.66 0.980502
Target:  5'- aGCCG-CUCcCGCuccuCCAGGCG-CAGCu -3'
miRNA:   3'- gUGGCuGAGaGCGc---GGUUUGCuGUCG- -5'
10959 5' -54.2 NC_002794.1 + 53588 0.66 0.980502
Target:  5'- aCACCGugUCg-GCGUCGGcgucaccgggccGCcGCAGCg -3'
miRNA:   3'- -GUGGCugAGagCGCGGUU------------UGcUGUCG- -5'
10959 5' -54.2 NC_002794.1 + 36365 0.66 0.980502
Target:  5'- cCACCGGgUg-CGCGCCc-GCGGCgaAGCg -3'
miRNA:   3'- -GUGGCUgAgaGCGCGGuuUGCUG--UCG- -5'
10959 5' -54.2 NC_002794.1 + 149262 0.66 0.980502
Target:  5'- cCACC-ACcCUCGUccccGCCGGcggcGCGGCGGCu -3'
miRNA:   3'- -GUGGcUGaGAGCG----CGGUU----UGCUGUCG- -5'
10959 5' -54.2 NC_002794.1 + 36931 0.66 0.980502
Target:  5'- gACCGcggaggagaaAgUC-CGCGUCGcGCGGCGGCa -3'
miRNA:   3'- gUGGC----------UgAGaGCGCGGUuUGCUGUCG- -5'
10959 5' -54.2 NC_002794.1 + 61529 0.66 0.980502
Target:  5'- cCGCCGGCggccgccgCgaagaCGaCGCCGccGCGGCGGCg -3'
miRNA:   3'- -GUGGCUGa-------Ga----GC-GCGGUu-UGCUGUCG- -5'
10959 5' -54.2 NC_002794.1 + 64829 0.66 0.980502
Target:  5'- aGCCGGCgC-CGaCGaCCGGACGGCgcGGCg -3'
miRNA:   3'- gUGGCUGaGaGC-GC-GGUUUGCUG--UCG- -5'
10959 5' -54.2 NC_002794.1 + 69842 0.66 0.980502
Target:  5'- cCGCUGGCUCaC-CGCCucGCGAacaGGCg -3'
miRNA:   3'- -GUGGCUGAGaGcGCGGuuUGCUg--UCG- -5'
10959 5' -54.2 NC_002794.1 + 137606 0.66 0.980502
Target:  5'- cCGCCGGCggUCGCG----GCGGCGGUg -3'
miRNA:   3'- -GUGGCUGagAGCGCgguuUGCUGUCG- -5'
10959 5' -54.2 NC_002794.1 + 40399 0.66 0.98029
Target:  5'- uCGCCGAUUCggUCGCggggucgGCC-GGCGACucuGCa -3'
miRNA:   3'- -GUGGCUGAG--AGCG-------CGGuUUGCUGu--CG- -5'
10959 5' -54.2 NC_002794.1 + 147020 0.66 0.979643
Target:  5'- cCGCCGGCgCUCGgucuaaggacgaaGCCGu-CGGCGGCc -3'
miRNA:   3'- -GUGGCUGaGAGCg------------CGGUuuGCUGUCG- -5'
10959 5' -54.2 NC_002794.1 + 32511 0.66 0.979203
Target:  5'- uGCCGGCUCccgcCGUGCCGgugaugagcaagAcgcggaaagguaggaACGGCAGCc -3'
miRNA:   3'- gUGGCUGAGa---GCGCGGU------------U---------------UGCUGUCG- -5'
10959 5' -54.2 NC_002794.1 + 69404 0.66 0.978302
Target:  5'- gAgCGGC-CagGCGCCGAgccGCGACAGg -3'
miRNA:   3'- gUgGCUGaGagCGCGGUU---UGCUGUCg -5'
10959 5' -54.2 NC_002794.1 + 157511 0.66 0.978302
Target:  5'- uUACCGGCggaCGCGCUggGgauccaguUGGCGGCu -3'
miRNA:   3'- -GUGGCUGagaGCGCGGuuU--------GCUGUCG- -5'
10959 5' -54.2 NC_002794.1 + 48043 0.66 0.978302
Target:  5'- aCGCCGAgUg-CGUGCUggGC-ACGGCg -3'
miRNA:   3'- -GUGGCUgAgaGCGCGGuuUGcUGUCG- -5'
10959 5' -54.2 NC_002794.1 + 194571 0.66 0.978302
Target:  5'- gACCcacGCUCUC-CGCCAGcCGgaACAGCu -3'
miRNA:   3'- gUGGc--UGAGAGcGCGGUUuGC--UGUCG- -5'
10959 5' -54.2 NC_002794.1 + 82464 0.66 0.978302
Target:  5'- -cCCGAC-CUCGaCGCCGucggccuccgcGACG-CGGCc -3'
miRNA:   3'- guGGCUGaGAGC-GCGGU-----------UUGCuGUCG- -5'
10959 5' -54.2 NC_002794.1 + 112831 0.66 0.978302
Target:  5'- cCGCCGaguacggcuGCUCgucggCGCGCC--GCaGCAGCu -3'
miRNA:   3'- -GUGGC---------UGAGa----GCGCGGuuUGcUGUCG- -5'
10959 5' -54.2 NC_002794.1 + 107762 0.66 0.978302
Target:  5'- cCGCUGGCUggagcgcgCUCGC-CCGgcGACGACcGCg -3'
miRNA:   3'- -GUGGCUGA--------GAGCGcGGU--UUGCUGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.