Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1096 | 3' | -64 | NC_000929.1 | + | 3878 | 0.66 | 0.202577 |
Target: 5'- --aAGGCGAC-GUCGCagggcgcgggagAGCGGCCCu -3' miRNA: 3'- uugUCCGCUGuCGGCGg-----------UCGCCGGGc -5' |
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1096 | 3' | -64 | NC_000929.1 | + | 18566 | 0.67 | 0.177919 |
Target: 5'- -cCAGuGCGGuCAGCUuuuucauGCCGGUGGCaCCGg -3' miRNA: 3'- uuGUC-CGCU-GUCGG-------CGGUCGCCG-GGC- -5' |
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1096 | 3' | -64 | NC_000929.1 | + | 23971 | 0.66 | 0.203644 |
Target: 5'- aAGC-GGCGACAGCgauuggCGUUauucugaaaAGUGGCCCGg -3' miRNA: 3'- -UUGuCCGCUGUCG------GCGG---------UCGCCGGGC- -5' |
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1096 | 3' | -64 | NC_000929.1 | + | 25403 | 0.66 | 0.209052 |
Target: 5'- gGAguGGCGGCGGUCGUCguguacggAGCGGCg-- -3' miRNA: 3'- -UUguCCGCUGUCGGCGG--------UCGCCGggc -5' |
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1096 | 3' | -64 | NC_000929.1 | + | 25542 | 0.67 | 0.183211 |
Target: 5'- uGCAGGUaauGcCAGCgGCU-GUGGCCCGg -3' miRNA: 3'- uUGUCCG---CuGUCGgCGGuCGCCGGGC- -5' |
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1096 | 3' | -64 | NC_000929.1 | + | 25868 | 0.68 | 0.14376 |
Target: 5'- aAGCAGGCGcaauugGCAGUacaGCCGGUgcauGGCUCGg -3' miRNA: 3'- -UUGUCCGC------UGUCGg--CGGUCG----CCGGGC- -5' |
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1096 | 3' | -64 | NC_000929.1 | + | 26359 | 0.66 | 0.193191 |
Target: 5'- -cCAGGCGACGuCCGCCAGCcuguuuuuGCUCc -3' miRNA: 3'- uuGUCCGCUGUcGGCGGUCGc-------CGGGc -5' |
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1096 | 3' | -64 | NC_000929.1 | + | 30056 | 1.05 | 0.000147 |
Target: 5'- aAACAGGCGACAGCCGCCAGCGGCCCGc -3' miRNA: 3'- -UUGUCCGCUGUCGGCGGUCGCCGGGC- -5' |
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1096 | 3' | -64 | NC_000929.1 | + | 30113 | 0.68 | 0.14376 |
Target: 5'- cGCuGGCGGCuGUCGCCuguuuGCGGCgCa -3' miRNA: 3'- uUGuCCGCUGuCGGCGGu----CGCCGgGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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