miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1096 3' -64 NC_000929.1 + 30056 1.05 0.000147
Target:  5'- aAACAGGCGACAGCCGCCAGCGGCCCGc -3'
miRNA:   3'- -UUGUCCGCUGUCGGCGGUCGCCGGGC- -5'
1096 3' -64 NC_000929.1 + 25868 0.68 0.14376
Target:  5'- aAGCAGGCGcaauugGCAGUacaGCCGGUgcauGGCUCGg -3'
miRNA:   3'- -UUGUCCGC------UGUCGg--CGGUCG----CCGGGC- -5'
1096 3' -64 NC_000929.1 + 23971 0.66 0.203644
Target:  5'- aAGC-GGCGACAGCgauuggCGUUauucugaaaAGUGGCCCGg -3'
miRNA:   3'- -UUGuCCGCUGUCG------GCGG---------UCGCCGGGC- -5'
1096 3' -64 NC_000929.1 + 25403 0.66 0.209052
Target:  5'- gGAguGGCGGCGGUCGUCguguacggAGCGGCg-- -3'
miRNA:   3'- -UUguCCGCUGUCGGCGG--------UCGCCGggc -5'
1096 3' -64 NC_000929.1 + 30113 0.68 0.14376
Target:  5'- cGCuGGCGGCuGUCGCCuguuuGCGGCgCa -3'
miRNA:   3'- uUGuCCGCUGuCGGCGGu----CGCCGgGc -5'
1096 3' -64 NC_000929.1 + 18566 0.67 0.177919
Target:  5'- -cCAGuGCGGuCAGCUuuuucauGCCGGUGGCaCCGg -3'
miRNA:   3'- uuGUC-CGCU-GUCGG-------CGGUCGCCG-GGC- -5'
1096 3' -64 NC_000929.1 + 25542 0.67 0.183211
Target:  5'- uGCAGGUaauGcCAGCgGCU-GUGGCCCGg -3'
miRNA:   3'- uUGUCCG---CuGUCGgCGGuCGCCGGGC- -5'
1096 3' -64 NC_000929.1 + 26359 0.66 0.193191
Target:  5'- -cCAGGCGACGuCCGCCAGCcuguuuuuGCUCc -3'
miRNA:   3'- uuGUCCGCUGUcGGCGGUCGc-------CGGGc -5'
1096 3' -64 NC_000929.1 + 3878 0.66 0.202577
Target:  5'- --aAGGCGAC-GUCGCagggcgcgggagAGCGGCCCu -3'
miRNA:   3'- uugUCCGCUGuCGGCGg-----------UCGCCGGGc -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.