miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1096 5' -54.8 NC_000929.1 + 26716 0.66 0.636755
Target:  5'- gAUgGCAcugCGGCGGCaACCGCCGUg-- -3'
miRNA:   3'- -UGgUGUa--GCCGUCGcUGGUGGUAagg -5'
1096 5' -54.8 NC_000929.1 + 14741 0.67 0.562145
Target:  5'- cACCGCGuUCGGCAucacgcagcaucugcGCGGCC-CgGUUCg -3'
miRNA:   3'- -UGGUGU-AGCCGU---------------CGCUGGuGgUAAGg -5'
1096 5' -54.8 NC_000929.1 + 15051 0.67 0.567738
Target:  5'- cGCCGgAUCGcgaugauGCAGCG-CCACCGgcacgcgcauuUUCCc -3'
miRNA:   3'- -UGGUgUAGC-------CGUCGCuGGUGGU-----------AAGG- -5'
1096 5' -54.8 NC_000929.1 + 27069 0.67 0.580092
Target:  5'- aACUACGUCaugcuGGCAGCGGCgCAgaCAUaCCg -3'
miRNA:   3'- -UGGUGUAG-----CCGUCGCUG-GUg-GUAaGG- -5'
1096 5' -54.8 NC_000929.1 + 10990 0.68 0.513681
Target:  5'- uACUAC--UGGCAGCcguguuuACCGCCGUUCUg -3'
miRNA:   3'- -UGGUGuaGCCGUCGc------UGGUGGUAAGG- -5'
1096 5' -54.8 NC_000929.1 + 35456 0.68 0.471167
Target:  5'- gGCCGUAUUGGUgGGCGACCACCuaaacuaaCCa -3'
miRNA:   3'- -UGGUGUAGCCG-UCGCUGGUGGuaa-----GG- -5'
1096 5' -54.8 NC_000929.1 + 31881 0.68 0.471167
Target:  5'- cACCGCuuuugCGGUGGCuGCCAgCGUUUCa -3'
miRNA:   3'- -UGGUGua---GCCGUCGcUGGUgGUAAGG- -5'
1096 5' -54.8 NC_000929.1 + 6308 0.68 0.49115
Target:  5'- uGCCugAUuuaacuguaauucCGGCAacgccuGCGACCGCUuucgGUUCCa -3'
miRNA:   3'- -UGGugUA-------------GCCGU------CGCUGGUGG----UAAGG- -5'
1096 5' -54.8 NC_000929.1 + 14517 0.68 0.524558
Target:  5'- cACCACGguggcguggUGGCAGCG-CCugUAUgcugUCCu -3'
miRNA:   3'- -UGGUGUa--------GCCGUCGCuGGugGUA----AGG- -5'
1096 5' -54.8 NC_000929.1 + 18520 0.69 0.450588
Target:  5'- gACCGCAcUGGCGGCaGACCuucCCGacaUCCu -3'
miRNA:   3'- -UGGUGUaGCCGUCG-CUGGu--GGUa--AGG- -5'
1096 5' -54.8 NC_000929.1 + 14117 0.69 0.427546
Target:  5'- uGCCACcgguaacggcgguuAUCuGGCAGaGGCCGCCcgUCUg -3'
miRNA:   3'- -UGGUG--------------UAG-CCGUCgCUGGUGGuaAGG- -5'
1096 5' -54.8 NC_000929.1 + 17138 0.69 0.420673
Target:  5'- gGCgGCAUCaGCAGUGGUCGCCAgacuuUUCCc -3'
miRNA:   3'- -UGgUGUAGcCGUCGCUGGUGGU-----AAGG- -5'
1096 5' -54.8 NC_000929.1 + 8429 0.69 0.449572
Target:  5'- aGCCGCGUucuuucaUGGCAcCGAgCACCuGUUCCa -3'
miRNA:   3'- -UGGUGUA-------GCCGUcGCUgGUGG-UAAGG- -5'
1096 5' -54.8 NC_000929.1 + 14866 0.72 0.283211
Target:  5'- cAUCACGUgcCGG-AGCGAUgCGCCAUUCCa -3'
miRNA:   3'- -UGGUGUA--GCCgUCGCUG-GUGGUAAGG- -5'
1096 5' -54.8 NC_000929.1 + 30091 1.11 0.000447
Target:  5'- cACCACAUCGGCAGCGACCACCAUUCCu -3'
miRNA:   3'- -UGGUGUAGCCGUCGCUGGUGGUAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.