miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10960 3' -55.5 NC_002794.1 + 76818 0.66 0.964607
Target:  5'- aCCG-GACGUCacgCCagCGgCCGGCGAUg -3'
miRNA:   3'- -GGCuCUGCAGga-GGa-GCaGGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 75483 0.66 0.964607
Target:  5'- gCCGAGACGgCCcgCgUaCGagCCGGCAACc -3'
miRNA:   3'- -GGCUCUGCaGGa-GgA-GCa-GGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 98971 0.66 0.964607
Target:  5'- gCCGucGGCGgcgCCguggCCUCGguggUCGGCGGCu -3'
miRNA:   3'- -GGCu-CUGCa--GGa---GGAGCa---GGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 626 0.66 0.961292
Target:  5'- cCCGGuguGGCGUucgCCUCC-CGUCCccgccgcGCAGCg -3'
miRNA:   3'- -GGCU---CUGCA---GGAGGaGCAGGu------CGUUG- -5'
10960 3' -55.5 NC_002794.1 + 2075 0.66 0.957769
Target:  5'- uCCGAGACGaCCgccggCCUUauaCGGCGACc -3'
miRNA:   3'- -GGCUCUGCaGGa----GGAGcagGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 149247 0.66 0.957769
Target:  5'- gCCGGGgucGCGgcgCCaccacCCUCGUCCccgccGGCGGCg -3'
miRNA:   3'- -GGCUC---UGCa--GGa----GGAGCAGG-----UCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 125246 0.66 0.957769
Target:  5'- aCGAGGCGcUgCUCUgCGucUCCAGCAAg -3'
miRNA:   3'- gGCUCUGC-AgGAGGaGC--AGGUCGUUg -5'
10960 3' -55.5 NC_002794.1 + 45478 0.66 0.957769
Target:  5'- cCCGAGcuCGgCCUCCgcCGUCCAcucGUAGCc -3'
miRNA:   3'- -GGCUCu-GCaGGAGGa-GCAGGU---CGUUG- -5'
10960 3' -55.5 NC_002794.1 + 17895 0.66 0.957769
Target:  5'- cCUGAGcCuGUUgaCCggCGUCCGGCAGCu -3'
miRNA:   3'- -GGCUCuG-CAGgaGGa-GCAGGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 12313 0.66 0.954032
Target:  5'- gCGGGAC-UCCUCCgcgGUCCGcGUGACc -3'
miRNA:   3'- gGCUCUGcAGGAGGag-CAGGU-CGUUG- -5'
10960 3' -55.5 NC_002794.1 + 114318 0.66 0.954032
Target:  5'- gCCgGAGGCGcUCCUCgUaGUCCcgccGCAGCg -3'
miRNA:   3'- -GG-CUCUGC-AGGAGgAgCAGGu---CGUUG- -5'
10960 3' -55.5 NC_002794.1 + 177065 0.66 0.954032
Target:  5'- cCCGGGAuCGUCCaauUUCUCca-CAGCGGCu -3'
miRNA:   3'- -GGCUCU-GCAGG---AGGAGcagGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 184142 0.66 0.950077
Target:  5'- aCCGuGGCGUUCggaUCCg---CCGGCGACg -3'
miRNA:   3'- -GGCuCUGCAGG---AGGagcaGGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 53205 0.67 0.945903
Target:  5'- cCCG-GAC-UCgUCgUCGUCgAGCGGCg -3'
miRNA:   3'- -GGCuCUGcAGgAGgAGCAGgUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 32652 0.67 0.945903
Target:  5'- aCCGGGGCGacggcgccgUCC-CCgUCGUCCGcCAACc -3'
miRNA:   3'- -GGCUCUGC---------AGGaGG-AGCAGGUcGUUG- -5'
10960 3' -55.5 NC_002794.1 + 182960 0.67 0.941505
Target:  5'- gCCGAcGGCGgccggCUCCUCGUUCgAGcCGACg -3'
miRNA:   3'- -GGCU-CUGCag---GAGGAGCAGG-UC-GUUG- -5'
10960 3' -55.5 NC_002794.1 + 44534 0.67 0.941505
Target:  5'- gCGAGcgcgcCGUCgUCgUCG-CCGGCGGCg -3'
miRNA:   3'- gGCUCu----GCAGgAGgAGCaGGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 41801 0.67 0.941505
Target:  5'- cCCGAagcaGACGUCCagCgaggCGcCCAGCAGg -3'
miRNA:   3'- -GGCU----CUGCAGGagGa---GCaGGUCGUUg -5'
10960 3' -55.5 NC_002794.1 + 195609 0.67 0.941505
Target:  5'- cCCGcgcuGGCGUCCggCCcaaaCGgCCGGCGACg -3'
miRNA:   3'- -GGCu---CUGCAGGa-GGa---GCaGGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 102527 0.67 0.941505
Target:  5'- gCGGGACGaCCUCUUC-UCgGGCcGCg -3'
miRNA:   3'- gGCUCUGCaGGAGGAGcAGgUCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.