miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10960 3' -55.5 NC_002794.1 + 8115 0.81 0.289137
Target:  5'- aCCGAGcggGCGgcggCCUCCUCGgugaCCGGCGACg -3'
miRNA:   3'- -GGCUC---UGCa---GGAGGAGCa---GGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 53901 0.77 0.471322
Target:  5'- uCCGGcGGCGUCCUCgUCGccgUCGGCGGCg -3'
miRNA:   3'- -GGCU-CUGCAGGAGgAGCa--GGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 192478 0.76 0.518131
Target:  5'- gCCGAGcccuCGUCCgCCUCGUCCcacggccGCGACa -3'
miRNA:   3'- -GGCUCu---GCAGGaGGAGCAGGu------CGUUG- -5'
10960 3' -55.5 NC_002794.1 + 51363 0.75 0.566678
Target:  5'- cCCGAGGCGgCCgCCcCGUCCGGcCGGCg -3'
miRNA:   3'- -GGCUCUGCaGGaGGaGCAGGUC-GUUG- -5'
10960 3' -55.5 NC_002794.1 + 113650 0.75 0.576541
Target:  5'- gCGGcccGGCGUCCUCggCGUCCAGCGcgGCg -3'
miRNA:   3'- gGCU---CUGCAGGAGgaGCAGGUCGU--UG- -5'
10960 3' -55.5 NC_002794.1 + 37807 0.74 0.596374
Target:  5'- aCGAGACgGUCgCUCCcgcCGUCaCGGCGACg -3'
miRNA:   3'- gGCUCUG-CAG-GAGGa--GCAG-GUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 103695 0.74 0.636285
Target:  5'- gCGAGAUGgCCUCCUUG-CCGGUGAUg -3'
miRNA:   3'- gGCUCUGCaGGAGGAGCaGGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 50733 0.73 0.65625
Target:  5'- cCCGGGGCGgccgCCUCgacucgCUCGUCCgccccgGGCGGCg -3'
miRNA:   3'- -GGCUCUGCa---GGAG------GAGCAGG------UCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 133920 0.73 0.676142
Target:  5'- aCGAGACGgcggCCgcgCC-CGUCCAGUuGCg -3'
miRNA:   3'- gGCUCUGCa---GGa--GGaGCAGGUCGuUG- -5'
10960 3' -55.5 NC_002794.1 + 50788 0.73 0.68604
Target:  5'- cUCG-GGCGgcgCCUCCUCGcCCGGCGu- -3'
miRNA:   3'- -GGCuCUGCa--GGAGGAGCaGGUCGUug -5'
10960 3' -55.5 NC_002794.1 + 183189 0.72 0.695896
Target:  5'- aCCGAGACGcgCCgCCaCG-CCGGCGGCg -3'
miRNA:   3'- -GGCUCUGCa-GGaGGaGCaGGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 141884 0.72 0.705701
Target:  5'- aCGAaaGAC-UCCUCC-CGUCCAgGCGACg -3'
miRNA:   3'- gGCU--CUGcAGGAGGaGCAGGU-CGUUG- -5'
10960 3' -55.5 NC_002794.1 + 61328 0.72 0.715447
Target:  5'- aCCGAGACGcgacuuucUCgCUCCccgaCGUCCAGCucGACg -3'
miRNA:   3'- -GGCUCUGC--------AG-GAGGa---GCAGGUCG--UUG- -5'
10960 3' -55.5 NC_002794.1 + 115330 0.72 0.715447
Target:  5'- gCCGcGGCGUCCgggCCgcucggcaCGUCCAgGCGACa -3'
miRNA:   3'- -GGCuCUGCAGGa--GGa-------GCAGGU-CGUUG- -5'
10960 3' -55.5 NC_002794.1 + 117057 0.71 0.753666
Target:  5'- aCGGGcCGUCCgugagCCUCGgguaCGGCGGCa -3'
miRNA:   3'- gGCUCuGCAGGa----GGAGCag--GUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 185158 0.71 0.772198
Target:  5'- gCCGAcGCGUCCUCCg---CCGGCGcgGCg -3'
miRNA:   3'- -GGCUcUGCAGGAGGagcaGGUCGU--UG- -5'
10960 3' -55.5 NC_002794.1 + 10969 0.71 0.772198
Target:  5'- gCCGAGACGUCCgaugCCUgcUCCgaGGCcGCa -3'
miRNA:   3'- -GGCUCUGCAGGa---GGAgcAGG--UCGuUG- -5'
10960 3' -55.5 NC_002794.1 + 115876 0.7 0.799081
Target:  5'- uCCGGGGCGUCCggggCGUCCGcGgAGCg -3'
miRNA:   3'- -GGCUCUGCAGGaggaGCAGGU-CgUUG- -5'
10960 3' -55.5 NC_002794.1 + 188314 0.7 0.799081
Target:  5'- cCCGucGuCGUCgUCCUCGUcgccgccgCCGGCGGCg -3'
miRNA:   3'- -GGCu-CuGCAGgAGGAGCA--------GGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 76300 0.7 0.807765
Target:  5'- cCCGAG-CGUCUgggCCcgCG-CCGGCAACc -3'
miRNA:   3'- -GGCUCuGCAGGa--GGa-GCaGGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.