miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10960 3' -55.5 NC_002794.1 + 136206 0.67 0.941505
Target:  5'- cCCGAGAa--CCUCC-CGggCCAGcCGACg -3'
miRNA:   3'- -GGCUCUgcaGGAGGaGCa-GGUC-GUUG- -5'
10960 3' -55.5 NC_002794.1 + 10832 0.67 0.932032
Target:  5'- uCCGAGACGgcgcCCUgCUCGUCacgcuCGACc -3'
miRNA:   3'- -GGCUCUGCa---GGAgGAGCAGguc--GUUG- -5'
10960 3' -55.5 NC_002794.1 + 105637 0.67 0.926955
Target:  5'- cCCGAGuacGCGUUCUCCgucUCG-CC-GCGGCg -3'
miRNA:   3'- -GGCUC---UGCAGGAGG---AGCaGGuCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 118299 0.67 0.926955
Target:  5'- gCCGGGcGCGUCgCUCgUCGUCgucgucGCGACg -3'
miRNA:   3'- -GGCUC-UGCAG-GAGgAGCAGgu----CGUUG- -5'
10960 3' -55.5 NC_002794.1 + 30964 0.67 0.926955
Target:  5'- aCGGGAUGUCgugacggUCCUCc-CCGGCGACg -3'
miRNA:   3'- gGCUCUGCAGg------AGGAGcaGGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 146207 0.67 0.926435
Target:  5'- uUGGGAcugacuuacucguCGUCCUCCUCgGUCgCGGCGu- -3'
miRNA:   3'- gGCUCU-------------GCAGGAGGAG-CAG-GUCGUug -5'
10960 3' -55.5 NC_002794.1 + 116313 0.67 0.92165
Target:  5'- cCCGAGagcaccGCGaUCa-CCUCGUCCAGCu-- -3'
miRNA:   3'- -GGCUC------UGC-AGgaGGAGCAGGUCGuug -5'
10960 3' -55.5 NC_002794.1 + 49179 0.67 0.92165
Target:  5'- gCCGAGcccACGgCCUUCUCGUCCcccGCGu- -3'
miRNA:   3'- -GGCUC---UGCaGGAGGAGCAGGu--CGUug -5'
10960 3' -55.5 NC_002794.1 + 49026 0.68 0.918358
Target:  5'- gCCGcGGCGUCgUCCggcgcggucgucagCGUCCAgggcgcGCAGCa -3'
miRNA:   3'- -GGCuCUGCAGgAGGa-------------GCAGGU------CGUUG- -5'
10960 3' -55.5 NC_002794.1 + 65267 0.68 0.916117
Target:  5'- gCCGAGcgGCGgcgCCUCCUCGcCCcccucGGCGu- -3'
miRNA:   3'- -GGCUC--UGCa--GGAGGAGCaGG-----UCGUug -5'
10960 3' -55.5 NC_002794.1 + 82056 0.68 0.916117
Target:  5'- gCGGcGGCGUCgUCCUCGgccucgCCGGCc-- -3'
miRNA:   3'- gGCU-CUGCAGgAGGAGCa-----GGUCGuug -5'
10960 3' -55.5 NC_002794.1 + 62457 0.68 0.910358
Target:  5'- gCGAGuuCGUCCUCCUCGa--GGCGc- -3'
miRNA:   3'- gGCUCu-GCAGGAGGAGCaggUCGUug -5'
10960 3' -55.5 NC_002794.1 + 50616 0.68 0.910358
Target:  5'- aUCGAGACGagCUgCUugccCGUCCGGCGGu -3'
miRNA:   3'- -GGCUCUGCagGAgGA----GCAGGUCGUUg -5'
10960 3' -55.5 NC_002794.1 + 87311 0.68 0.910358
Target:  5'- cCCGGuaGCgGUCC-CCagGUCCAGCGGCg -3'
miRNA:   3'- -GGCUc-UG-CAGGaGGagCAGGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 45151 0.68 0.904373
Target:  5'- gCCcAGGcCGaCUUCCgagaccgCGUCCAGCAGCg -3'
miRNA:   3'- -GGcUCU-GCaGGAGGa------GCAGGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 191700 0.68 0.904373
Target:  5'- gUCGcGGACcaccUCCUCgUCGUCCgAGCGGCc -3'
miRNA:   3'- -GGC-UCUGc---AGGAGgAGCAGG-UCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 2176 0.68 0.900676
Target:  5'- aCCGGGGCGUgUUCCUCGacaaaaauggggaagUCCgAGaCGACc -3'
miRNA:   3'- -GGCUCUGCAgGAGGAGC---------------AGG-UC-GUUG- -5'
10960 3' -55.5 NC_002794.1 + 143721 0.68 0.898166
Target:  5'- cCCGgcGGGCGUCgUCCUCG-CCcGCcgGACg -3'
miRNA:   3'- -GGC--UCUGCAGgAGGAGCaGGuCG--UUG- -5'
10960 3' -55.5 NC_002794.1 + 193125 0.68 0.894336
Target:  5'- aCCGucgucGGCGgcagCUCCUCGugcccguacagcgccUCCAGCAGCa -3'
miRNA:   3'- -GGCu----CUGCag--GAGGAGC---------------AGGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 180988 0.68 0.891738
Target:  5'- uCCGAGACGgagcucgucUCCUCCgaggcgaagcUCGUCUccgaAGCGAa -3'
miRNA:   3'- -GGCUCUGC---------AGGAGG----------AGCAGG----UCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.