miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10960 3' -55.5 NC_002794.1 + 626 0.66 0.961292
Target:  5'- cCCGGuguGGCGUucgCCUCC-CGUCCccgccgcGCAGCg -3'
miRNA:   3'- -GGCU---CUGCA---GGAGGaGCAGGu------CGUUG- -5'
10960 3' -55.5 NC_002794.1 + 1950 0.69 0.863158
Target:  5'- uCCGAGGCGcCCgccggCCUUauacgggGUCCGGgGGCg -3'
miRNA:   3'- -GGCUCUGCaGGa----GGAG-------CAGGUCgUUG- -5'
10960 3' -55.5 NC_002794.1 + 2012 0.69 0.863158
Target:  5'- uCCGAGGCGcCCgccggCCUUauacgggGUCCGGgGGCg -3'
miRNA:   3'- -GGCUCUGCaGGa----GGAG-------CAGGUCgUUG- -5'
10960 3' -55.5 NC_002794.1 + 2075 0.66 0.957769
Target:  5'- uCCGAGACGaCCgccggCCUUauaCGGCGACc -3'
miRNA:   3'- -GGCUCUGCaGGa----GGAGcagGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 2176 0.68 0.900676
Target:  5'- aCCGGGGCGUgUUCCUCGacaaaaauggggaagUCCgAGaCGACc -3'
miRNA:   3'- -GGCUCUGCAgGAGGAGC---------------AGG-UC-GUUG- -5'
10960 3' -55.5 NC_002794.1 + 8115 0.81 0.289137
Target:  5'- aCCGAGcggGCGgcggCCUCCUCGgugaCCGGCGACg -3'
miRNA:   3'- -GGCUC---UGCa---GGAGGAGCa---GGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 10832 0.67 0.932032
Target:  5'- uCCGAGACGgcgcCCUgCUCGUCacgcuCGACc -3'
miRNA:   3'- -GGCUCUGCa---GGAgGAGCAGguc--GUUG- -5'
10960 3' -55.5 NC_002794.1 + 10969 0.71 0.772198
Target:  5'- gCCGAGACGUCCgaugCCUgcUCCgaGGCcGCa -3'
miRNA:   3'- -GGCUCUGCAGGa---GGAgcAGG--UCGuUG- -5'
10960 3' -55.5 NC_002794.1 + 12313 0.66 0.954032
Target:  5'- gCGGGAC-UCCUCCgcgGUCCGcGUGACc -3'
miRNA:   3'- gGCUCUGcAGGAGGag-CAGGU-CGUUG- -5'
10960 3' -55.5 NC_002794.1 + 17895 0.66 0.957769
Target:  5'- cCUGAGcCuGUUgaCCggCGUCCGGCAGCu -3'
miRNA:   3'- -GGCUCuG-CAGgaGGa-GCAGGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 18655 0.69 0.874019
Target:  5'- cCCGGGACGaccgucgccgCUUCCUCGgcugccgccgccgucUCCGGCAcgGCg -3'
miRNA:   3'- -GGCUCUGCa---------GGAGGAGC---------------AGGUCGU--UG- -5'
10960 3' -55.5 NC_002794.1 + 30671 0.69 0.871167
Target:  5'- aCGAGGCGaUCUCgCaCGUCCGGCGGa -3'
miRNA:   3'- gGCUCUGCaGGAG-GaGCAGGUCGUUg -5'
10960 3' -55.5 NC_002794.1 + 30964 0.67 0.926955
Target:  5'- aCGGGAUGUCgugacggUCCUCc-CCGGCGACg -3'
miRNA:   3'- gGCUCUGCAGg------AGGAGcaGGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 31367 0.69 0.878235
Target:  5'- gUCGaAGuCGUCCUCCUCcccGUCguCGGCGGCc -3'
miRNA:   3'- -GGC-UCuGCAGGAGGAG---CAG--GUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 32652 0.67 0.945903
Target:  5'- aCCGGGGCGacggcgccgUCC-CCgUCGUCCGcCAACc -3'
miRNA:   3'- -GGCUCUGC---------AGGaGG-AGCAGGUcGUUG- -5'
10960 3' -55.5 NC_002794.1 + 37807 0.74 0.596374
Target:  5'- aCGAGACgGUCgCUCCcgcCGUCaCGGCGACg -3'
miRNA:   3'- gGCUCUG-CAG-GAGGa--GCAG-GUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 41801 0.67 0.941505
Target:  5'- cCCGAagcaGACGUCCagCgaggCGcCCAGCAGg -3'
miRNA:   3'- -GGCU----CUGCAGGagGa---GCaGGUCGUUg -5'
10960 3' -55.5 NC_002794.1 + 44534 0.67 0.941505
Target:  5'- gCGAGcgcgcCGUCgUCgUCG-CCGGCGGCg -3'
miRNA:   3'- gGCUCu----GCAGgAGgAGCaGGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 45151 0.68 0.904373
Target:  5'- gCCcAGGcCGaCUUCCgagaccgCGUCCAGCAGCg -3'
miRNA:   3'- -GGcUCU-GCaGGAGGa------GCAGGUCGUUG- -5'
10960 3' -55.5 NC_002794.1 + 45478 0.66 0.957769
Target:  5'- cCCGAGcuCGgCCUCCgcCGUCCAcucGUAGCc -3'
miRNA:   3'- -GGCUCu-GCaGGAGGa-GCAGGU---CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.