miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10960 5' -60.3 NC_002794.1 + 80430 0.66 0.822345
Target:  5'- gCGggGCCGC-CgCCGGcgGCCGCCg-- -3'
miRNA:   3'- aGCagCGGCGaG-GGCCa-UGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 78063 0.66 0.822345
Target:  5'- cCGcCGCCGCccgaaCgCCGGccGCCGCCcUCg -3'
miRNA:   3'- aGCaGCGGCGa----G-GGCCa-UGGCGGaAG- -5'
10960 5' -60.3 NC_002794.1 + 40971 0.66 0.822345
Target:  5'- aCGUCcaGCCGCUUCCcuaucucgugaGGU-CCGCgUUCc -3'
miRNA:   3'- aGCAG--CGGCGAGGG-----------CCAuGGCGgAAG- -5'
10960 5' -60.3 NC_002794.1 + 73934 0.66 0.821533
Target:  5'- cUCGUCGCCGCcgaacgcuUCCUGGccagcUcuuucgacgccucGCCGCCg-- -3'
miRNA:   3'- -AGCAGCGGCG--------AGGGCC-----A-------------UGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 23560 0.66 0.814148
Target:  5'- -gGUCcCCcCaggCCCGGUGCCGCCg-- -3'
miRNA:   3'- agCAGcGGcGa--GGGCCAUGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 93075 0.66 0.814148
Target:  5'- aCGagCGCCuGUUCCCGGgcUGCgGCCUc- -3'
miRNA:   3'- aGCa-GCGG-CGAGGGCC--AUGgCGGAag -5'
10960 5' -60.3 NC_002794.1 + 105902 0.66 0.814148
Target:  5'- -aGUCGCCGCggcggCGGcgcUACCGCCg-- -3'
miRNA:   3'- agCAGCGGCGagg--GCC---AUGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 191182 0.66 0.805802
Target:  5'- aUCGUCG-CGCUcgCCCGGccgcCCGCCcgcUCg -3'
miRNA:   3'- -AGCAGCgGCGA--GGGCCau--GGCGGa--AG- -5'
10960 5' -60.3 NC_002794.1 + 90952 0.66 0.805802
Target:  5'- cUGUgCGCCGaggCCCGGgcCCG-CUUCg -3'
miRNA:   3'- aGCA-GCGGCga-GGGCCauGGCgGAAG- -5'
10960 5' -60.3 NC_002794.1 + 35293 0.66 0.797313
Target:  5'- gCGUCGUgCGCcCUCGGacggACCGCCagUUCa -3'
miRNA:   3'- aGCAGCG-GCGaGGGCCa---UGGCGG--AAG- -5'
10960 5' -60.3 NC_002794.1 + 49452 0.66 0.797313
Target:  5'- gUCGUCGCCGUggCgCCGccgugaccgGCCGCCg-- -3'
miRNA:   3'- -AGCAGCGGCGa-G-GGCca-------UGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 123757 0.66 0.797313
Target:  5'- cCGU-GCCGCuUCCCGGgcguggaCGCCUcCg -3'
miRNA:   3'- aGCAgCGGCG-AGGGCCaug----GCGGAaG- -5'
10960 5' -60.3 NC_002794.1 + 156668 0.66 0.797313
Target:  5'- --cUCGCCGUUCgcgaUCGGUACuCGCCcgUCu -3'
miRNA:   3'- agcAGCGGCGAG----GGCCAUG-GCGGa-AG- -5'
10960 5' -60.3 NC_002794.1 + 146345 0.66 0.797313
Target:  5'- cCGUCGUCGaUCgCGGcgGCCGCCc-- -3'
miRNA:   3'- aGCAGCGGCgAGgGCCa-UGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 194508 0.66 0.797313
Target:  5'- cCGgC-CCGCggCCCGcGUGCCGCCg-- -3'
miRNA:   3'- aGCaGcGGCGa-GGGC-CAUGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 909 0.66 0.788689
Target:  5'- ---aCGCCGCUCCCcg---CGCCUUCu -3'
miRNA:   3'- agcaGCGGCGAGGGccaugGCGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 129485 0.66 0.788689
Target:  5'- uUUGUCGCCcgaauccgGUUUCCGuGUcGCCGCCgcggUCg -3'
miRNA:   3'- -AGCAGCGG--------CGAGGGC-CA-UGGCGGa---AG- -5'
10960 5' -60.3 NC_002794.1 + 44762 0.66 0.779938
Target:  5'- cUCGUCGCCG-UCCCGacgcAgCGCCUcCg -3'
miRNA:   3'- -AGCAGCGGCgAGGGCca--UgGCGGAaG- -5'
10960 5' -60.3 NC_002794.1 + 99278 0.66 0.779938
Target:  5'- cCGgCG-CGCUCCCGGgcucuuccgcgACCGCCg-- -3'
miRNA:   3'- aGCaGCgGCGAGGGCCa----------UGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 13149 0.66 0.779938
Target:  5'- gUCGUCGCCG-UCCCa-UGCCGCa--- -3'
miRNA:   3'- -AGCAGCGGCgAGGGccAUGGCGgaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.