miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10960 5' -60.3 NC_002794.1 + 18665 0.81 0.133906
Target:  5'- cCGUCGCCGCuUCCuCGGcUGCCGCCgccgUCu -3'
miRNA:   3'- aGCAGCGGCG-AGG-GCC-AUGGCGGa---AG- -5'
10960 5' -60.3 NC_002794.1 + 124473 0.79 0.179195
Target:  5'- gCGUCGCCGCcgcacgCCCGG-ACCGCCg-- -3'
miRNA:   3'- aGCAGCGGCGa-----GGGCCaUGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 66704 0.75 0.297688
Target:  5'- gCGUaCGCCGCgCCCGGcacgGCCGCCg-- -3'
miRNA:   3'- aGCA-GCGGCGaGGGCCa---UGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 13857 0.75 0.317889
Target:  5'- cUCGUCGCCGCcgccgcgaCCCGGUucuccgagcGCCGCCc-- -3'
miRNA:   3'- -AGCAGCGGCGa-------GGGCCA---------UGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 121239 0.75 0.324848
Target:  5'- -aGUCGCCGCUgCCGccGCCGCCg-- -3'
miRNA:   3'- agCAGCGGCGAgGGCcaUGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 189871 0.74 0.339104
Target:  5'- gUCGUCGCCGCcgaccggcccgCUCGGgcCCGCCgUCa -3'
miRNA:   3'- -AGCAGCGGCGa----------GGGCCauGGCGGaAG- -5'
10960 5' -60.3 NC_002794.1 + 21958 0.74 0.368958
Target:  5'- cCGUCgGCCGCUCCCGcGgcGCCGUCgUCu -3'
miRNA:   3'- aGCAG-CGGCGAGGGC-Ca-UGGCGGaAG- -5'
10960 5' -60.3 NC_002794.1 + 138508 0.74 0.376698
Target:  5'- aUGUCGCCGgUCCCGGUcgcuUCGCUcgUUCg -3'
miRNA:   3'- aGCAGCGGCgAGGGCCAu---GGCGG--AAG- -5'
10960 5' -60.3 NC_002794.1 + 106222 0.73 0.384546
Target:  5'- cCGUCGCCGCggccgcgCUCGGgucgcagACCGCCg-- -3'
miRNA:   3'- aGCAGCGGCGa------GGGCCa------UGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 100409 0.73 0.384546
Target:  5'- gCGUgGCCGCUguaCCGGUGCCuGUCUUUc -3'
miRNA:   3'- aGCAgCGGCGAg--GGCCAUGG-CGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 188329 0.73 0.400564
Target:  5'- cUCGUCGCCGC-CgCCGGcGgCGCCgUCg -3'
miRNA:   3'- -AGCAGCGGCGaG-GGCCaUgGCGGaAG- -5'
10960 5' -60.3 NC_002794.1 + 107148 0.73 0.400564
Target:  5'- aCGUCGgCGCcCCCGGcgaggGCCGCCg-- -3'
miRNA:   3'- aGCAGCgGCGaGGGCCa----UGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 92061 0.73 0.425372
Target:  5'- cCGgcgUGCCGCggCCGGUGCUGCCagUCg -3'
miRNA:   3'- aGCa--GCGGCGagGGCCAUGGCGGa-AG- -5'
10960 5' -60.3 NC_002794.1 + 137134 0.72 0.433843
Target:  5'- gUCGUcCGuCCGCccgCCCGGccgGCCGCCcUCg -3'
miRNA:   3'- -AGCA-GC-GGCGa--GGGCCa--UGGCGGaAG- -5'
10960 5' -60.3 NC_002794.1 + 99765 0.72 0.433843
Target:  5'- aCGUUGCCGCcgCCCgcGGUGCCGgCgUCg -3'
miRNA:   3'- aGCAGCGGCGa-GGG--CCAUGGCgGaAG- -5'
10960 5' -60.3 NC_002794.1 + 188586 0.72 0.442411
Target:  5'- aCGccCGCCGCUCCaCGG--CCGCCUUg -3'
miRNA:   3'- aGCa-GCGGCGAGG-GCCauGGCGGAAg -5'
10960 5' -60.3 NC_002794.1 + 193995 0.72 0.442411
Target:  5'- ---cCGCCGCcCCCGGcuUCGCCUUCg -3'
miRNA:   3'- agcaGCGGCGaGGGCCauGGCGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 50723 0.72 0.442411
Target:  5'- gCGuUCGCCGC-CCgGGgcgGCCGCCUcgacUCg -3'
miRNA:   3'- aGC-AGCGGCGaGGgCCa--UGGCGGA----AG- -5'
10960 5' -60.3 NC_002794.1 + 80220 0.72 0.451074
Target:  5'- aCGccUCGCCGCacaCCGGcGCCGUCUUCc -3'
miRNA:   3'- aGC--AGCGGCGag-GGCCaUGGCGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 67835 0.72 0.459828
Target:  5'- cCGgccCGCCGUcgCCCGGcGCCGCCgcgcgUCa -3'
miRNA:   3'- aGCa--GCGGCGa-GGGCCaUGGCGGa----AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.