miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10960 5' -60.3 NC_002794.1 + 149403 0.66 0.779938
Target:  5'- aCGUCGCCGCgCgUGuGUGCCGUgUg- -3'
miRNA:   3'- aGCAGCGGCGaGgGC-CAUGGCGgAag -5'
10960 5' -60.3 NC_002794.1 + 33430 0.66 0.774629
Target:  5'- cUCGg-GCUGgUCCCGGUgcaggaccucgggcgGCCGCCg-- -3'
miRNA:   3'- -AGCagCGGCgAGGGCCA---------------UGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 194435 0.66 0.771067
Target:  5'- aCGUCGuCCGCcCCCGG--CCGCUc-- -3'
miRNA:   3'- aGCAGC-GGCGaGGGCCauGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 92613 0.66 0.771067
Target:  5'- uUC-UCGCCGCUgCUGGcgcaccaguacUACCggGCCUUCu -3'
miRNA:   3'- -AGcAGCGGCGAgGGCC-----------AUGG--CGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 16466 0.66 0.771067
Target:  5'- cUCGUCcgGCUGCccagCCCGccGCCGCCUcCg -3'
miRNA:   3'- -AGCAG--CGGCGa---GGGCcaUGGCGGAaG- -5'
10960 5' -60.3 NC_002794.1 + 28688 0.66 0.771067
Target:  5'- cCGUCGCCGC-CgCCGuUGCUGCUg-- -3'
miRNA:   3'- aGCAGCGGCGaG-GGCcAUGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 37694 0.66 0.771067
Target:  5'- cCG-CGCCGUcuUCUCGu--CCGCCUUCu -3'
miRNA:   3'- aGCaGCGGCG--AGGGCcauGGCGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 190090 0.66 0.771067
Target:  5'- cUCGUCGCgcaGCUCCCacgccCCGCCgUCc -3'
miRNA:   3'- -AGCAGCGg--CGAGGGccau-GGCGGaAG- -5'
10960 5' -60.3 NC_002794.1 + 180680 0.66 0.771067
Target:  5'- cUCGcCgGCCGCUCCCGGcgcCCGgCg-- -3'
miRNA:   3'- -AGCaG-CGGCGAGGGCCau-GGCgGaag -5'
10960 5' -60.3 NC_002794.1 + 61553 0.67 0.762084
Target:  5'- aCGcCGCCGCgg-CGGcgGCCGCCgUCg -3'
miRNA:   3'- aGCaGCGGCGaggGCCa-UGGCGGaAG- -5'
10960 5' -60.3 NC_002794.1 + 42205 0.67 0.762084
Target:  5'- --cUCGCCGC-CgCCGGUcuGCCGCUggaUCa -3'
miRNA:   3'- agcAGCGGCGaG-GGCCA--UGGCGGa--AG- -5'
10960 5' -60.3 NC_002794.1 + 63956 0.67 0.752997
Target:  5'- aCGccUCGCCGCgcgCCCGaaucACCGCCg-- -3'
miRNA:   3'- aGC--AGCGGCGa--GGGCca--UGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 77049 0.67 0.752997
Target:  5'- cUCGU-GCCGCggaCCGcGUcCCGCUUUCu -3'
miRNA:   3'- -AGCAgCGGCGag-GGC-CAuGGCGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 103948 0.67 0.743814
Target:  5'- cCGcCGCCGCUCgCCa--GCCGCCggCg -3'
miRNA:   3'- aGCaGCGGCGAG-GGccaUGGCGGaaG- -5'
10960 5' -60.3 NC_002794.1 + 137573 0.67 0.743814
Target:  5'- cCGUCGCCGCcggggCCggagugCGGggaGCCGCCg-- -3'
miRNA:   3'- aGCAGCGGCGa----GG------GCCa--UGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 152252 0.67 0.741041
Target:  5'- cCGUCGCCGUcggacaguacgccgUCCag--ACCGUCUUCg -3'
miRNA:   3'- aGCAGCGGCG--------------AGGgccaUGGCGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 13766 0.67 0.734542
Target:  5'- --cUCGCCGCcccggagccaCCCGGguggcuccgGCCGUCUUCg -3'
miRNA:   3'- agcAGCGGCGa---------GGGCCa--------UGGCGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 63189 0.67 0.734542
Target:  5'- -gGUCG-CGCUCCUGGgucugACCGUCg-- -3'
miRNA:   3'- agCAGCgGCGAGGGCCa----UGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 131028 0.67 0.72519
Target:  5'- gUCGUgCGgCGCggCCGGcUGCCGCCg-- -3'
miRNA:   3'- -AGCA-GCgGCGagGGCC-AUGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 113541 0.67 0.723311
Target:  5'- gCGUCGCCGg-CCCGGagcaggcgccggACCGUCUg- -3'
miRNA:   3'- aGCAGCGGCgaGGGCCa-----------UGGCGGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.