miRNA display CGI


Results 1 - 20 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10960 5' -60.3 NC_002794.1 + 909 0.66 0.788689
Target:  5'- ---aCGCCGCUCCCcg---CGCCUUCu -3'
miRNA:   3'- agcaGCGGCGAGGGccaugGCGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 11806 0.72 0.459828
Target:  5'- gCGcCGCCGC-CgCCGucGCCGCCUUCg -3'
miRNA:   3'- aGCaGCGGCGaG-GGCcaUGGCGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 12017 0.69 0.609515
Target:  5'- aUGUgCGCCGCcggCCCGGgcgucCgCGCCUUCc -3'
miRNA:   3'- aGCA-GCGGCGa--GGGCCau---G-GCGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 12173 0.68 0.71008
Target:  5'- aUCGUCGCCGCcgacgccgccgcggCCgGGcGCCGCUc-- -3'
miRNA:   3'- -AGCAGCGGCGa-------------GGgCCaUGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 13149 0.66 0.779938
Target:  5'- gUCGUCGCCG-UCCCa-UGCCGCa--- -3'
miRNA:   3'- -AGCAGCGGCgAGGGccAUGGCGgaag -5'
10960 5' -60.3 NC_002794.1 + 13766 0.67 0.734542
Target:  5'- --cUCGCCGCcccggagccaCCCGGguggcuccgGCCGUCUUCg -3'
miRNA:   3'- agcAGCGGCGa---------GGGCCa--------UGGCGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 13857 0.75 0.317889
Target:  5'- cUCGUCGCCGCcgccgcgaCCCGGUucuccgagcGCCGCCc-- -3'
miRNA:   3'- -AGCAGCGGCGa-------GGGCCA---------UGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 16466 0.66 0.771067
Target:  5'- cUCGUCcgGCUGCccagCCCGccGCCGCCUcCg -3'
miRNA:   3'- -AGCAG--CGGCGa---GGGCcaUGGCGGAaG- -5'
10960 5' -60.3 NC_002794.1 + 16508 0.68 0.687136
Target:  5'- cCGcCGCCGUcCCCGGcgucgccACCGCCgUCc -3'
miRNA:   3'- aGCaGCGGCGaGGGCCa------UGGCGGaAG- -5'
10960 5' -60.3 NC_002794.1 + 18665 0.81 0.133906
Target:  5'- cCGUCGCCGCuUCCuCGGcUGCCGCCgccgUCu -3'
miRNA:   3'- aGCAGCGGCG-AGG-GCC-AUGGCGGa---AG- -5'
10960 5' -60.3 NC_002794.1 + 21958 0.74 0.368958
Target:  5'- cCGUCgGCCGCUCCCGcGgcGCCGUCgUCu -3'
miRNA:   3'- aGCAG-CGGCGAGGGC-Ca-UGGCGGaAG- -5'
10960 5' -60.3 NC_002794.1 + 22831 0.69 0.619235
Target:  5'- gCGUCGCCGCUCCU----UCGUUUUCg -3'
miRNA:   3'- aGCAGCGGCGAGGGccauGGCGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 23560 0.66 0.814148
Target:  5'- -gGUCcCCcCaggCCCGGUGCCGCCg-- -3'
miRNA:   3'- agCAGcGGcGa--GGGCCAUGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 28688 0.66 0.771067
Target:  5'- cCGUCGCCGC-CgCCGuUGCUGCUg-- -3'
miRNA:   3'- aGCAGCGGCGaG-GGCcAUGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 29869 0.69 0.609515
Target:  5'- aUCGUC-CCGCUCCCacc-CCGCCUcUCu -3'
miRNA:   3'- -AGCAGcGGCGAGGGccauGGCGGA-AG- -5'
10960 5' -60.3 NC_002794.1 + 31388 0.71 0.532807
Target:  5'- gUCGUcggcggcccCGCCGCgCCCGccgcgcccGCCGCCUUCg -3'
miRNA:   3'- -AGCA---------GCGGCGaGGGCca------UGGCGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 33430 0.66 0.774629
Target:  5'- cUCGg-GCUGgUCCCGGUgcaggaccucgggcgGCCGCCg-- -3'
miRNA:   3'- -AGCagCGGCgAGGGCCA---------------UGGCGGaag -5'
10960 5' -60.3 NC_002794.1 + 35293 0.66 0.797313
Target:  5'- gCGUCGUgCGCcCUCGGacggACCGCCagUUCa -3'
miRNA:   3'- aGCAGCG-GCGaGGGCCa---UGGCGG--AAG- -5'
10960 5' -60.3 NC_002794.1 + 37694 0.66 0.771067
Target:  5'- cCG-CGCCGUcuUCUCGu--CCGCCUUCu -3'
miRNA:   3'- aGCaGCGGCG--AGGGCcauGGCGGAAG- -5'
10960 5' -60.3 NC_002794.1 + 38510 0.71 0.495711
Target:  5'- -gGUCGCCGCcgccuccgcgaUCCCaGGUcGCCGCCg-- -3'
miRNA:   3'- agCAGCGGCG-----------AGGG-CCA-UGGCGGaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.