miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10961 3' -58.7 NC_002794.1 + 111752 0.66 0.864463
Target:  5'- aGCu--GgcGCCGcGCGGCGcCGUCGGg -3'
miRNA:   3'- aUGucuCuuCGGU-CGCCGCuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 110450 0.66 0.864463
Target:  5'- gGCGGAGGccGGCgAGcCGGCu-CGUCGGc -3'
miRNA:   3'- aUGUCUCU--UCGgUC-GCCGcuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 52887 0.66 0.864463
Target:  5'- gAUGGuGggGUCGaacGCGGCGcCGCCGc -3'
miRNA:   3'- aUGUCuCuuCGGU---CGCCGCuGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 100535 0.66 0.863732
Target:  5'- gGCAccGAGGAGCagcgGGCGGCcuuccccGugGCCGa -3'
miRNA:   3'- aUGU--CUCUUCGg---UCGCCG-------CugCGGCc -5'
10961 3' -58.7 NC_002794.1 + 176600 0.66 0.862265
Target:  5'- cACGGAGAgcGGCCGGCacggccauccucguGGCGuuCGgcCCGGa -3'
miRNA:   3'- aUGUCUCU--UCGGUCG--------------CCGCu-GC--GGCC- -5'
10961 3' -58.7 NC_002794.1 + 149603 0.66 0.85707
Target:  5'- gACcGAGGAGCCcccGaCGGgGACGUgGGa -3'
miRNA:   3'- aUGuCUCUUCGGu--C-GCCgCUGCGgCC- -5'
10961 3' -58.7 NC_002794.1 + 138427 0.66 0.85707
Target:  5'- gACucGucGAGCCgcgguGGCGGCGGCGCCu- -3'
miRNA:   3'- aUGu-CucUUCGG-----UCGCCGCUGCGGcc -5'
10961 3' -58.7 NC_002794.1 + 71288 0.66 0.85707
Target:  5'- aUACGGAaaauAGCCGcCGGCG-CGCuCGGg -3'
miRNA:   3'- -AUGUCUcu--UCGGUcGCCGCuGCG-GCC- -5'
10961 3' -58.7 NC_002794.1 + 140089 0.66 0.85632
Target:  5'- aGCAG-GAcguccauGGUCGGCGGCGAuCGaCGGc -3'
miRNA:   3'- aUGUCuCU-------UCGGUCGCCGCU-GCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 44279 0.66 0.849487
Target:  5'- gACGGAGGAGUCcGCGcc--CGCCGGg -3'
miRNA:   3'- aUGUCUCUUCGGuCGCcgcuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 66859 0.66 0.849487
Target:  5'- cGCGGcGAGGCC-GCGGCGuGCgGCUGa -3'
miRNA:   3'- aUGUCuCUUCGGuCGCCGC-UG-CGGCc -5'
10961 3' -58.7 NC_002794.1 + 96756 0.66 0.849487
Target:  5'- cGCA-AGcGGCCGGCGGuCGAguCGcCCGGg -3'
miRNA:   3'- aUGUcUCuUCGGUCGCC-GCU--GC-GGCC- -5'
10961 3' -58.7 NC_002794.1 + 95802 0.66 0.849487
Target:  5'- gGCGGAGGAaCCGGgGgaGCGGCGgCGGn -3'
miRNA:   3'- aUGUCUCUUcGGUCgC--CGCUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 66721 0.66 0.844848
Target:  5'- cACGGccgccgccaccGCCGGCGGUGGCGgCGGc -3'
miRNA:   3'- aUGUCucuu-------CGGUCGCCGCUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 70285 0.66 0.84172
Target:  5'- -cCGGAGAgcaGGCCGGgGG-GGC-CCGGg -3'
miRNA:   3'- auGUCUCU---UCGGUCgCCgCUGcGGCC- -5'
10961 3' -58.7 NC_002794.1 + 94136 0.66 0.84172
Target:  5'- ----uGGAAGguCCGaccGCGGCGGCGCUGGa -3'
miRNA:   3'- augucUCUUC--GGU---CGCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 123324 0.66 0.84172
Target:  5'- aGCAGGGGccgcAGCUGGgGGUGGCGUuccaaCGGu -3'
miRNA:   3'- aUGUCUCU----UCGGUCgCCGCUGCG-----GCC- -5'
10961 3' -58.7 NC_002794.1 + 138602 0.66 0.84172
Target:  5'- gGCGGAGAgcGGCUuugugAGUcGCGAUGCCGc -3'
miRNA:   3'- aUGUCUCU--UCGG-----UCGcCGCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 143258 0.66 0.84172
Target:  5'- gUGCAGgaGGAAGgcCCGGCc-CGGCGCCGGc -3'
miRNA:   3'- -AUGUC--UCUUC--GGUCGccGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 17127 0.66 0.84172
Target:  5'- gACGGucGAAGCCGGCgaaacGGCGguaGCGCCc- -3'
miRNA:   3'- aUGUCu-CUUCGGUCG-----CCGC---UGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.