Results 1 - 20 of 234 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 112329 | 0.86 | 0.072044 |
Target: 5'- gGCGGGGAGcgcGCCGGcCGGCGGCGCCGGc -3' miRNA: 3'- aUGUCUCUU---CGGUC-GCCGCUGCGGCC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 92255 | 0.84 | 0.100681 |
Target: 5'- gGCGGcGucGCUGGCGGCGGCGCCGGg -3' miRNA: 3'- aUGUCuCuuCGGUCGCCGCUGCGGCC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 14644 | 0.82 | 0.146953 |
Target: 5'- cACGGAGAcGCCGGCGccGCGGCGUCGGu -3' miRNA: 3'- aUGUCUCUuCGGUCGC--CGCUGCGGCC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 94452 | 0.82 | 0.139813 |
Target: 5'- cGCGGAGGAGUCGGUGGCGACGgcaaCGGc -3' miRNA: 3'- aUGUCUCUUCGGUCGCCGCUGCg---GCC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 118255 | 0.82 | 0.129699 |
Target: 5'- gGCuGGAGGucGGCCggGGCGGCGGCGCCGGc -3' miRNA: 3'- aUG-UCUCU--UCGG--UCGCCGCUGCGGCC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 67006 | 0.82 | 0.129699 |
Target: 5'- uUACAGAcGAGuCCGGCGGCGGCGgCCGGc -3' miRNA: 3'- -AUGUCUcUUC-GGUCGCCGCUGC-GGCC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 145718 | 0.81 | 0.158286 |
Target: 5'- aACGGGGAucgGGCgcuggaGGCGGCGGCGCCGGc -3' miRNA: 3'- aUGUCUCU---UCGg-----UCGCCGCUGCGGCC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 62055 | 0.81 | 0.154423 |
Target: 5'- cGguGGccGAcGCCGGCGGCGACGCCGGc -3' miRNA: 3'- aUguCU--CUuCGGUCGCCGCUGCGGCC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 38487 | 0.81 | 0.150646 |
Target: 5'- gGCGGAgGAAGC--GCGGCGGCGCCGGu -3' miRNA: 3'- aUGUCU-CUUCGguCGCCGCUGCGGCC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 108395 | 0.81 | 0.154423 |
Target: 5'- aGCGGAGGcuCCGGCGGCGGCGCCc- -3' miRNA: 3'- aUGUCUCUucGGUCGCCGCUGCGGcc -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 95830 | 0.8 | 0.187846 |
Target: 5'- -cCGGGGGAG-CGGCGGCGGCGgCCGGg -3' miRNA: 3'- auGUCUCUUCgGUCGCCGCUGC-GGCC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 23951 | 0.8 | 0.197144 |
Target: 5'- cGCGGcGcacuuggcuccGAGCCAGCGGCGAgGCCGGc -3' miRNA: 3'- aUGUCuC-----------UUCGGUCGCCGCUgCGGCC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 111313 | 0.78 | 0.244072 |
Target: 5'- gACGGAGAcgccgGGCCAGCGGCGcGgGCCGc -3' miRNA: 3'- aUGUCUCU-----UCGGUCGCCGC-UgCGGCc -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 142389 | 0.78 | 0.255687 |
Target: 5'- gGCGGAGAcggcggugcAGgCGGCgucGGCGGCGCCGGg -3' miRNA: 3'- aUGUCUCU---------UCgGUCG---CCGCUGCGGCC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 101258 | 0.78 | 0.255687 |
Target: 5'- aGCGGGGGGccgcccccggcGCCGGUGGCGGCGgCGGg -3' miRNA: 3'- aUGUCUCUU-----------CGGUCGCCGCUGCgGCC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 110486 | 0.77 | 0.267752 |
Target: 5'- -gUAGAGAGG-CGGUGGCGGCGCCuGGa -3' miRNA: 3'- auGUCUCUUCgGUCGCCGCUGCGG-CC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 185248 | 0.77 | 0.286705 |
Target: 5'- cACgAGAGAAagcGCCAGCGGaCGcCGCCGGc -3' miRNA: 3'- aUG-UCUCUU---CGGUCGCC-GCuGCGGCC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 37734 | 0.77 | 0.293253 |
Target: 5'- aGCGGcGgcGCCGccggcggcggcGCGGCGGCGCCGGc -3' miRNA: 3'- aUGUCuCuuCGGU-----------CGCCGCUGCGGCC- -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 99586 | 0.77 | 0.299918 |
Target: 5'- gUGCGGAG-GGCgCGGCGGCGGCGCgCGc -3' miRNA: 3'- -AUGUCUCuUCG-GUCGCCGCUGCG-GCc -5' |
|||||||
10961 | 3' | -58.7 | NC_002794.1 | + | 131191 | 0.76 | 0.320611 |
Target: 5'- gACAGcacGgcGCCGG-GGCGGCGCCGGu -3' miRNA: 3'- aUGUCu--CuuCGGUCgCCGCUGCGGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home