miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10961 3' -58.7 NC_002794.1 + 112329 0.86 0.072044
Target:  5'- gGCGGGGAGcgcGCCGGcCGGCGGCGCCGGc -3'
miRNA:   3'- aUGUCUCUU---CGGUC-GCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 92255 0.84 0.100681
Target:  5'- gGCGGcGucGCUGGCGGCGGCGCCGGg -3'
miRNA:   3'- aUGUCuCuuCGGUCGCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 67006 0.82 0.129699
Target:  5'- uUACAGAcGAGuCCGGCGGCGGCGgCCGGc -3'
miRNA:   3'- -AUGUCUcUUC-GGUCGCCGCUGC-GGCC- -5'
10961 3' -58.7 NC_002794.1 + 118255 0.82 0.129699
Target:  5'- gGCuGGAGGucGGCCggGGCGGCGGCGCCGGc -3'
miRNA:   3'- aUG-UCUCU--UCGG--UCGCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 94452 0.82 0.139813
Target:  5'- cGCGGAGGAGUCGGUGGCGACGgcaaCGGc -3'
miRNA:   3'- aUGUCUCUUCGGUCGCCGCUGCg---GCC- -5'
10961 3' -58.7 NC_002794.1 + 14644 0.82 0.146953
Target:  5'- cACGGAGAcGCCGGCGccGCGGCGUCGGu -3'
miRNA:   3'- aUGUCUCUuCGGUCGC--CGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 38487 0.81 0.150646
Target:  5'- gGCGGAgGAAGC--GCGGCGGCGCCGGu -3'
miRNA:   3'- aUGUCU-CUUCGguCGCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 62055 0.81 0.154423
Target:  5'- cGguGGccGAcGCCGGCGGCGACGCCGGc -3'
miRNA:   3'- aUguCU--CUuCGGUCGCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 108395 0.81 0.154423
Target:  5'- aGCGGAGGcuCCGGCGGCGGCGCCc- -3'
miRNA:   3'- aUGUCUCUucGGUCGCCGCUGCGGcc -5'
10961 3' -58.7 NC_002794.1 + 145718 0.81 0.158286
Target:  5'- aACGGGGAucgGGCgcuggaGGCGGCGGCGCCGGc -3'
miRNA:   3'- aUGUCUCU---UCGg-----UCGCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 95830 0.8 0.187846
Target:  5'- -cCGGGGGAG-CGGCGGCGGCGgCCGGg -3'
miRNA:   3'- auGUCUCUUCgGUCGCCGCUGC-GGCC- -5'
10961 3' -58.7 NC_002794.1 + 23951 0.8 0.197144
Target:  5'- cGCGGcGcacuuggcuccGAGCCAGCGGCGAgGCCGGc -3'
miRNA:   3'- aUGUCuC-----------UUCGGUCGCCGCUgCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 111313 0.78 0.244072
Target:  5'- gACGGAGAcgccgGGCCAGCGGCGcGgGCCGc -3'
miRNA:   3'- aUGUCUCU-----UCGGUCGCCGC-UgCGGCc -5'
10961 3' -58.7 NC_002794.1 + 142389 0.78 0.255687
Target:  5'- gGCGGAGAcggcggugcAGgCGGCgucGGCGGCGCCGGg -3'
miRNA:   3'- aUGUCUCU---------UCgGUCG---CCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 101258 0.78 0.255687
Target:  5'- aGCGGGGGGccgcccccggcGCCGGUGGCGGCGgCGGg -3'
miRNA:   3'- aUGUCUCUU-----------CGGUCGCCGCUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 110486 0.77 0.267752
Target:  5'- -gUAGAGAGG-CGGUGGCGGCGCCuGGa -3'
miRNA:   3'- auGUCUCUUCgGUCGCCGCUGCGG-CC- -5'
10961 3' -58.7 NC_002794.1 + 185248 0.77 0.286705
Target:  5'- cACgAGAGAAagcGCCAGCGGaCGcCGCCGGc -3'
miRNA:   3'- aUG-UCUCUU---CGGUCGCC-GCuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 37734 0.77 0.293253
Target:  5'- aGCGGcGgcGCCGccggcggcggcGCGGCGGCGCCGGc -3'
miRNA:   3'- aUGUCuCuuCGGU-----------CGCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 99586 0.77 0.299918
Target:  5'- gUGCGGAG-GGCgCGGCGGCGGCGCgCGc -3'
miRNA:   3'- -AUGUCUCuUCG-GUCGCCGCUGCG-GCc -5'
10961 3' -58.7 NC_002794.1 + 93996 0.76 0.313597
Target:  5'- cGCGGAcgccGgcGCCGGCGGCGG-GCCGGc -3'
miRNA:   3'- aUGUCU----CuuCGGUCGCCGCUgCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.