miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10961 3' -58.7 NC_002794.1 + 131191 0.76 0.320611
Target:  5'- gACAGcacGgcGCCGG-GGCGGCGCCGGu -3'
miRNA:   3'- aUGUCu--CuuCGGUCgCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 80429 0.75 0.342356
Target:  5'- gGCGGGGccGCCGcCGGCGGcCGCCGGc -3'
miRNA:   3'- aUGUCUCuuCGGUcGCCGCU-GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 72430 0.75 0.342356
Target:  5'- --aGGAGGAGCCGGCggagggaccGGCGGCGCCc- -3'
miRNA:   3'- augUCUCUUCGGUCG---------CCGCUGCGGcc -5'
10961 3' -58.7 NC_002794.1 + 179696 0.75 0.342356
Target:  5'- gGCGGcGgcGaCGGUGGCGACGCCGGc -3'
miRNA:   3'- aUGUCuCuuCgGUCGCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 44311 0.75 0.342356
Target:  5'- gGCGGGGAgcgaccgcgAGCgCGGCGGCGaagaagacgGCGCCGGc -3'
miRNA:   3'- aUGUCUCU---------UCG-GUCGCCGC---------UGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 113517 0.75 0.349837
Target:  5'- cGCGGAGGGagcuccGCCGGCucGGCGuCGCCGGc -3'
miRNA:   3'- aUGUCUCUU------CGGUCG--CCGCuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 106379 0.75 0.352862
Target:  5'- cGCGGAGGgcagacGGCgGGCgaacggucggaccccGGCGGCGCCGGg -3'
miRNA:   3'- aUGUCUCU------UCGgUCG---------------CCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 55211 0.75 0.357433
Target:  5'- cGCGGcGGAGGCCGGCGGuCGA-GCCGa -3'
miRNA:   3'- aUGUC-UCUUCGGUCGCC-GCUgCGGCc -5'
10961 3' -58.7 NC_002794.1 + 32860 0.75 0.365145
Target:  5'- aGCGGccGAGCCGGCgGGCGGCGgCGGc -3'
miRNA:   3'- aUGUCucUUCGGUCG-CCGCUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 110614 0.74 0.38896
Target:  5'- aGCGGAGcggGAGCCgcggcgccgcGGCGGCGGgGUCGGg -3'
miRNA:   3'- aUGUCUC---UUCGG----------UCGCCGCUgCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 42651 0.74 0.397122
Target:  5'- cGCGGccGAAGCCGaCGGCGcCGCCGGc -3'
miRNA:   3'- aUGUCu-CUUCGGUcGCCGCuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 16291 0.74 0.405392
Target:  5'- gGCGGAGucuAGCCuGGCGGCcGCGgCCGGc -3'
miRNA:   3'- aUGUCUCu--UCGG-UCGCCGcUGC-GGCC- -5'
10961 3' -58.7 NC_002794.1 + 21920 0.74 0.422255
Target:  5'- gGCGGAGAcGaCGGCGGCGGCGCgGc -3'
miRNA:   3'- aUGUCUCUuCgGUCGCCGCUGCGgCc -5'
10961 3' -58.7 NC_002794.1 + 60629 0.74 0.422255
Target:  5'- gACGGGcGGAcCCGGCgccGGCGGCGCCGGc -3'
miRNA:   3'- aUGUCU-CUUcGGUCG---CCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 126255 0.74 0.422255
Target:  5'- cGCGcGAGGucggcGGCUGGCuGGCGGCGCUGGg -3'
miRNA:   3'- aUGU-CUCU-----UCGGUCG-CCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 116076 0.74 0.422255
Target:  5'- cGCGGAGcgcucGGCgCGGCGGuCGuCGCCGGg -3'
miRNA:   3'- aUGUCUCu----UCG-GUCGCC-GCuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 13809 0.73 0.439533
Target:  5'- gACGGGcccGGCCGGCGGCGACgGCCu- -3'
miRNA:   3'- aUGUCUcu-UCGGUCGCCGCUG-CGGcc -5'
10961 3' -58.7 NC_002794.1 + 145044 0.73 0.443036
Target:  5'- aUAC-GAGGuggucaacuucaccgAGCUGGCGGCGGgGCCGGa -3'
miRNA:   3'- -AUGuCUCU---------------UCGGUCGCCGCUgCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 84389 0.73 0.448321
Target:  5'- aGCAGcgaAGAAGgCAGCGaCGACGCCGa -3'
miRNA:   3'- aUGUC---UCUUCgGUCGCcGCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 62490 0.73 0.457206
Target:  5'- aGCGcGAGuggacGGCgGGCGGCGcCGCCGGc -3'
miRNA:   3'- aUGU-CUCu----UCGgUCGCCGCuGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.