miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10961 3' -58.7 NC_002794.1 + 55287 0.73 0.457206
Target:  5'- gGCGGcgacGAGGgCGGCGGCGGCGUCGcGg -3'
miRNA:   3'- aUGUCu---CUUCgGUCGCCGCUGCGGC-C- -5'
10961 3' -58.7 NC_002794.1 + 114712 0.73 0.475254
Target:  5'- gACGGAcGgcGgCGGCGGCGGCuCCGGg -3'
miRNA:   3'- aUGUCU-CuuCgGUCGCCGCUGcGGCC- -5'
10961 3' -58.7 NC_002794.1 + 12209 0.73 0.475254
Target:  5'- -uCGGAcguGCCGGCGGCGucggcgGCGCCGGc -3'
miRNA:   3'- auGUCUcuuCGGUCGCCGC------UGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 141433 0.73 0.481655
Target:  5'- gGCGGGGgcGCCGGgGGCGccgggagcggcgcgGCGuCCGGa -3'
miRNA:   3'- aUGUCUCuuCGGUCgCCGC--------------UGC-GGCC- -5'
10961 3' -58.7 NC_002794.1 + 154365 0.73 0.48441
Target:  5'- cGCGGuccAGGCC-GCGGCGGCGgCGGg -3'
miRNA:   3'- aUGUCuc-UUCGGuCGCCGCUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 191354 0.73 0.48441
Target:  5'- gUACAGAGGAGUCGG-GGaCGG-GCCGGa -3'
miRNA:   3'- -AUGUCUCUUCGGUCgCC-GCUgCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 105894 0.73 0.48441
Target:  5'- gGgAGAGGAGUCgccgcGGCGGCGGCGCUa- -3'
miRNA:   3'- aUgUCUCUUCGG-----UCGCCGCUGCGGcc -5'
10961 3' -58.7 NC_002794.1 + 107878 0.73 0.48441
Target:  5'- cGCGGAGGcGGCgCGGCGgguGCGGCuGCCGGg -3'
miRNA:   3'- aUGUCUCU-UCG-GUCGC---CGCUG-CGGCC- -5'
10961 3' -58.7 NC_002794.1 + 77996 0.72 0.49365
Target:  5'- gGCGGGcGuuguuCCGGCGGCGGCGCCGu -3'
miRNA:   3'- aUGUCU-Cuuc--GGUCGCCGCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 190979 0.72 0.49365
Target:  5'- aGCAGAGcAGGCagcGCGGCGACGgCGu -3'
miRNA:   3'- aUGUCUC-UUCGgu-CGCCGCUGCgGCc -5'
10961 3' -58.7 NC_002794.1 + 137593 0.72 0.49365
Target:  5'- gUGCGGGGAGccgccGCCGGCGgucGCGGCGgCGGu -3'
miRNA:   3'- -AUGUCUCUU-----CGGUCGC---CGCUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 110417 0.72 0.49365
Target:  5'- gGCgAGAGAAGCCgGGCGGCuGucguCGUCGGu -3'
miRNA:   3'- aUG-UCUCUUCGG-UCGCCG-Cu---GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 107507 0.72 0.497369
Target:  5'- gACGGGGguGCCGGUcgacgccgacggccgGcGCGGCGCCGGc -3'
miRNA:   3'- aUGUCUCuuCGGUCG---------------C-CGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 120061 0.72 0.512366
Target:  5'- gGCGGccgcGGAGGCCgacgcggcgguGGCGGCGACGaCCGu -3'
miRNA:   3'- aUGUC----UCUUCGG-----------UCGCCGCUGC-GGCc -5'
10961 3' -58.7 NC_002794.1 + 183600 0.72 0.512366
Target:  5'- gGCGGAGGggGGCCGcgcGCGGcCGGCGCCc- -3'
miRNA:   3'- aUGUCUCU--UCGGU---CGCC-GCUGCGGcc -5'
10961 3' -58.7 NC_002794.1 + 141637 0.72 0.521833
Target:  5'- gACGGGaAGGCCGGCGuggccGCGGcCGCCGGc -3'
miRNA:   3'- aUGUCUcUUCGGUCGC-----CGCU-GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 111620 0.72 0.521833
Target:  5'- gGCGGGGccGCC-GCGGcCGcCGCCGGu -3'
miRNA:   3'- aUGUCUCuuCGGuCGCC-GCuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 86834 0.72 0.521833
Target:  5'- cGCcGGGAucgGGUCGGCGGCccCGCCGGg -3'
miRNA:   3'- aUGuCUCU---UCGGUCGCCGcuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 122201 0.72 0.521833
Target:  5'- cGCGGcGAAgcgguGCCGGCGccgcuacgauaaGCGGCGCCGGa -3'
miRNA:   3'- aUGUCuCUU-----CGGUCGC------------CGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 44719 0.72 0.531367
Target:  5'- cGCGGcGAcGUCGGcCGGCGcCGCCGGa -3'
miRNA:   3'- aUGUCuCUuCGGUC-GCCGCuGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.