miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10961 3' -58.7 NC_002794.1 + 41227 0.66 0.84172
Target:  5'- -cCGGGGAuuccucccacGCC-GCGGCcgccGACGCCGGc -3'
miRNA:   3'- auGUCUCUu---------CGGuCGCCG----CUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 115916 0.66 0.833773
Target:  5'- --uGGGGuggacuuGGCgCGGCGGCGG-GCCGGc -3'
miRNA:   3'- augUCUCu------UCG-GUCGCCGCUgCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 115969 0.66 0.833773
Target:  5'- gUGgGGGGGAGCgggaCGGgGaGCGGCGCCGcGg -3'
miRNA:   3'- -AUgUCUCUUCG----GUCgC-CGCUGCGGC-C- -5'
10961 3' -58.7 NC_002794.1 + 32269 0.66 0.833773
Target:  5'- gACGGcc-GGCCgaucGGCGaGCGACGCCGc -3'
miRNA:   3'- aUGUCucuUCGG----UCGC-CGCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 68807 0.66 0.833773
Target:  5'- aACAGGacGAcucgAGaCAGaCGGCGACGCCGc -3'
miRNA:   3'- aUGUCU--CU----UCgGUC-GCCGCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 189856 0.66 0.833773
Target:  5'- cGCGGAGccGUCGGCGuCGuCGCCGc -3'
miRNA:   3'- aUGUCUCuuCGGUCGCcGCuGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 103798 0.66 0.833773
Target:  5'- aGCuuGAGGugcGCCuGCgacGGCGGCGCCGa -3'
miRNA:   3'- aUGu-CUCUu--CGGuCG---CCGCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 145186 0.66 0.833773
Target:  5'- -uCGGAGAuggucGCC-GCGGCGGCccuCCGGc -3'
miRNA:   3'- auGUCUCUu----CGGuCGCCGCUGc--GGCC- -5'
10961 3' -58.7 NC_002794.1 + 109156 0.66 0.832969
Target:  5'- gGCGGGGGAGauggcgaCgAGCGGCGguaGCGgCGGa -3'
miRNA:   3'- aUGUCUCUUC-------GgUCGCCGC---UGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 116884 0.66 0.831356
Target:  5'- -uCAGGGggGCgccggcgccgucucCGGCGGCcgguccGGCGUCGGc -3'
miRNA:   3'- auGUCUCuuCG--------------GUCGCCG------CUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 14754 0.66 0.831356
Target:  5'- -uCGGAgcccGAAGCCgucgaggccgcugaGGcCGGCGAgGCCGGc -3'
miRNA:   3'- auGUCU----CUUCGG--------------UC-GCCGCUgCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 272 0.66 0.825655
Target:  5'- cGCGGAcgcGAGGaCGGCGGCccuggcgcgccGaACGCCGGg -3'
miRNA:   3'- aUGUCU---CUUCgGUCGCCG-----------C-UGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 67389 0.66 0.825655
Target:  5'- cGCGucGgcGCCAGCGuCGGCGCCa- -3'
miRNA:   3'- aUGUcuCuuCGGUCGCcGCUGCGGcc -5'
10961 3' -58.7 NC_002794.1 + 92325 0.66 0.825655
Target:  5'- gGCGGGGGcccgGGCgGGCGGCucGGCGUCa- -3'
miRNA:   3'- aUGUCUCU----UCGgUCGCCG--CUGCGGcc -5'
10961 3' -58.7 NC_002794.1 + 176895 0.66 0.825655
Target:  5'- gGCucGAGggGaCCGGUGG-GAUuGCCGGg -3'
miRNA:   3'- aUGu-CUCuuC-GGUCGCCgCUG-CGGCC- -5'
10961 3' -58.7 NC_002794.1 + 14579 0.66 0.825655
Target:  5'- gGCcGAccGAAGCgGGCcguGGCGagcGCGCCGGg -3'
miRNA:   3'- aUGuCU--CUUCGgUCG---CCGC---UGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 50577 0.66 0.825655
Target:  5'- cACGGcGu-GCgCGGCGGCuggguggccGGCGCCGGg -3'
miRNA:   3'- aUGUCuCuuCG-GUCGCCG---------CUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 120755 0.66 0.825655
Target:  5'- cGCAGAcucugcuGGCCcuGCuGCGACGCCGa -3'
miRNA:   3'- aUGUCUcu-----UCGGu-CGcCGCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 135558 0.66 0.823187
Target:  5'- aAUAGGGgcGCaGGcCGGCGAccgaucggaaacguCGCCGGg -3'
miRNA:   3'- aUGUCUCuuCGgUC-GCCGCU--------------GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 72462 0.67 0.817372
Target:  5'- cGCGccc-GGCCccGCGGCGGCGCCGa -3'
miRNA:   3'- aUGUcucuUCGGu-CGCCGCUGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.