miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10961 3' -58.7 NC_002794.1 + 51214 0.67 0.817372
Target:  5'- cGCGGAGcGGCCGGcCGGcCGAUGggaaaCGGu -3'
miRNA:   3'- aUGUCUCuUCGGUC-GCC-GCUGCg----GCC- -5'
10961 3' -58.7 NC_002794.1 + 99371 0.67 0.817372
Target:  5'- --aAGAGAAGCgGGaggugccgacgaUGGUGGCGCCGu -3'
miRNA:   3'- augUCUCUUCGgUC------------GCCGCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 102632 0.67 0.817372
Target:  5'- gGCGGucauccGCCGGCuGGCGGCGCgcuCGGa -3'
miRNA:   3'- aUGUCucuu--CGGUCG-CCGCUGCG---GCC- -5'
10961 3' -58.7 NC_002794.1 + 110249 0.67 0.817372
Target:  5'- gGCGGAGGuuucccGCgCGGCGucGCGACGgCGGc -3'
miRNA:   3'- aUGUCUCUu-----CG-GUCGC--CGCUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 123963 0.67 0.817372
Target:  5'- cGCGcAGGAGCCGuacgucgaccacGCcGUGGCGCCGGu -3'
miRNA:   3'- aUGUcUCUUCGGU------------CGcCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 145811 0.67 0.817372
Target:  5'- gACGccGccGCCGGCGGCGA-GCCGa -3'
miRNA:   3'- aUGUcuCuuCGGUCGCCGCUgCGGCc -5'
10961 3' -58.7 NC_002794.1 + 72462 0.67 0.817372
Target:  5'- cGCGccc-GGCCccGCGGCGGCGCCGa -3'
miRNA:   3'- aUGUcucuUCGGu-CGCCGCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 180726 0.67 0.817372
Target:  5'- -uCAGAGAcGC--GCGGaCGACGCCGu -3'
miRNA:   3'- auGUCUCUuCGguCGCC-GCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 84292 0.67 0.816535
Target:  5'- gACGG-GGAG-CGGCGGCGcuuccugGCGaCCGGg -3'
miRNA:   3'- aUGUCuCUUCgGUCGCCGC-------UGC-GGCC- -5'
10961 3' -58.7 NC_002794.1 + 191510 0.67 0.808932
Target:  5'- --gAGAGguGCCAGCGcCGgGCGUCGGc -3'
miRNA:   3'- augUCUCuuCGGUCGCcGC-UGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 65933 0.67 0.808932
Target:  5'- gGCGGuGgcGUCGGCGGCGGuauCGUCGc -3'
miRNA:   3'- aUGUCuCuuCGGUCGCCGCU---GCGGCc -5'
10961 3' -58.7 NC_002794.1 + 67720 0.67 0.808932
Target:  5'- aACAGGGGcucGGucCCGGCGGCGGCcacccgagcCCGGa -3'
miRNA:   3'- aUGUCUCU---UC--GGUCGCCGCUGc--------GGCC- -5'
10961 3' -58.7 NC_002794.1 + 95861 0.67 0.808079
Target:  5'- gGCGGGcGGGCCGuuucaguGUGGCGAC-CCGGc -3'
miRNA:   3'- aUGUCUcUUCGGU-------CGCCGCUGcGGCC- -5'
10961 3' -58.7 NC_002794.1 + 149649 0.67 0.800341
Target:  5'- aUGCGGuucgccgaGGAGGCCgAGCGGgGGCGCg-- -3'
miRNA:   3'- -AUGUC--------UCUUCGG-UCGCCgCUGCGgcc -5'
10961 3' -58.7 NC_002794.1 + 118680 0.67 0.800341
Target:  5'- cGCGGccGccGCCGGCGGCaGCGCCcaGGa -3'
miRNA:   3'- aUGUCu-CuuCGGUCGCCGcUGCGG--CC- -5'
10961 3' -58.7 NC_002794.1 + 180360 0.67 0.791607
Target:  5'- cGCAGAGGAcGaCCGGC-GCGAggacgcUGCCGGc -3'
miRNA:   3'- aUGUCUCUU-C-GGUCGcCGCU------GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 126383 0.67 0.791607
Target:  5'- gGCGccGggGCCugcGCGGCGGCGUgcgCGGc -3'
miRNA:   3'- aUGUcuCuuCGGu--CGCCGCUGCG---GCC- -5'
10961 3' -58.7 NC_002794.1 + 112736 0.67 0.791607
Target:  5'- cGCGGaAGgcGCggugcuccgCGGCGGCGGgGUCGGg -3'
miRNA:   3'- aUGUC-UCuuCG---------GUCGCCGCUgCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 116123 0.67 0.791607
Target:  5'- ---cGAGuccGCCgcGGCGGCGGCGgCGGc -3'
miRNA:   3'- auguCUCuu-CGG--UCGCCGCUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 101594 0.67 0.791607
Target:  5'- -cCGGGGggGCgGGUGcCGGCccGCCGGg -3'
miRNA:   3'- auGUCUCuuCGgUCGCcGCUG--CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.