miRNA display CGI


Results 61 - 80 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10961 3' -58.7 NC_002794.1 + 180360 0.67 0.791607
Target:  5'- cGCAGAGGAcGaCCGGC-GCGAggacgcUGCCGGc -3'
miRNA:   3'- aUGUCUCUU-C-GGUCGcCGCU------GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 135452 0.67 0.790726
Target:  5'- gACGGGcucccGggGCCcGCGGCcgacgacGACGCCGc -3'
miRNA:   3'- aUGUCU-----CuuCGGuCGCCG-------CUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 129909 0.67 0.786302
Target:  5'- cGCuGGGAgcacgcgauucgccaGGCCguggcgacGGCGGCGGCGgCGGc -3'
miRNA:   3'- aUGuCUCU---------------UCGG--------UCGCCGCUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 10957 0.67 0.782739
Target:  5'- -cCGGAGggGCCGGCcgaGACGuCCGa -3'
miRNA:   3'- auGUCUCuuCGGUCGccgCUGC-GGCc -5'
10961 3' -58.7 NC_002794.1 + 115182 0.67 0.782739
Target:  5'- gACGGcccGguGCCGGCGGuCGA-GCCGGc -3'
miRNA:   3'- aUGUCu--CuuCGGUCGCC-GCUgCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 107589 0.67 0.782739
Target:  5'- gGCGGAGAAGaCGGCGGgGGagaCGGg -3'
miRNA:   3'- aUGUCUCUUCgGUCGCCgCUgcgGCC- -5'
10961 3' -58.7 NC_002794.1 + 89397 0.67 0.782739
Target:  5'- cGCGGuGAGGUCcGUGGa-GCGCCGGc -3'
miRNA:   3'- aUGUCuCUUCGGuCGCCgcUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 105535 0.67 0.773744
Target:  5'- gACGuGAGAu-CCGGCGGCGGC-UCGGg -3'
miRNA:   3'- aUGU-CUCUucGGUCGCCGCUGcGGCC- -5'
10961 3' -58.7 NC_002794.1 + 54990 0.67 0.773744
Target:  5'- cGCGGcGA---CGGCGGCGAcuCGCCGGg -3'
miRNA:   3'- aUGUCuCUucgGUCGCCGCU--GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 123772 0.67 0.773744
Target:  5'- gGCGuGGAcGCCuccguguuggaGGCGGUGGCGCCGu -3'
miRNA:   3'- aUGUcUCUuCGG-----------UCGCCGCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 146999 0.68 0.76463
Target:  5'- gGCcGAcGucGgCGGCGGCGGcCGCCGGc -3'
miRNA:   3'- aUGuCU-CuuCgGUCGCCGCU-GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 31044 0.68 0.76463
Target:  5'- gACAGAuAGGgCAGCGGC-ACGgCGGc -3'
miRNA:   3'- aUGUCUcUUCgGUCGCCGcUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 42588 0.68 0.76463
Target:  5'- gACGGAGGAGggcGCGGCG--GCCGGg -3'
miRNA:   3'- aUGUCUCUUCgguCGCCGCugCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 101805 0.68 0.76463
Target:  5'- cGCuGGuuGGCgCAGCGGCG-CGCCGu -3'
miRNA:   3'- aUGuCUcuUCG-GUCGCCGCuGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 68756 0.68 0.76463
Target:  5'- gACuGAGccGGGCCGcCGG-GGCGCCGGa -3'
miRNA:   3'- aUGuCUC--UUCGGUcGCCgCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 103642 0.68 0.76463
Target:  5'- gUACGGGGAcaGGUCgaGGCaGGCG-UGCCGGu -3'
miRNA:   3'- -AUGUCUCU--UCGG--UCG-CCGCuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 101443 0.68 0.76463
Target:  5'- -cCGGGGAcGCCGGCGcGCccgcccgaaACGCCGGc -3'
miRNA:   3'- auGUCUCUuCGGUCGC-CGc--------UGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 95734 0.68 0.755406
Target:  5'- cGCAGAccguuggacGggGCUgguacucgcggGGCGGCGGCcgcgacggcgGCCGGg -3'
miRNA:   3'- aUGUCU---------CuuCGG-----------UCGCCGCUG----------CGGCC- -5'
10961 3' -58.7 NC_002794.1 + 72335 0.68 0.755406
Target:  5'- uUGCAGucgguGGAGCCGGUGGCGcuGCaCCGu -3'
miRNA:   3'- -AUGUCu----CUUCGGUCGCCGC--UGcGGCc -5'
10961 3' -58.7 NC_002794.1 + 156396 0.68 0.746081
Target:  5'- -cUAGAGcGGCCGGCGccGCGGCcgcggccacgGCCGGc -3'
miRNA:   3'- auGUCUCuUCGGUCGC--CGCUG----------CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.