miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10961 3' -58.7 NC_002794.1 + 272 0.66 0.825655
Target:  5'- cGCGGAcgcGAGGaCGGCGGCccuggcgcgccGaACGCCGGg -3'
miRNA:   3'- aUGUCU---CUUCgGUCGCCG-----------C-UGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 10957 0.67 0.782739
Target:  5'- -cCGGAGggGCCGGCcgaGACGuCCGa -3'
miRNA:   3'- auGUCUCuuCGGUCGccgCUGC-GGCc -5'
10961 3' -58.7 NC_002794.1 + 12209 0.73 0.475254
Target:  5'- -uCGGAcguGCCGGCGGCGucggcgGCGCCGGc -3'
miRNA:   3'- auGUCUcuuCGGUCGCCGC------UGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 13118 0.68 0.746081
Target:  5'- gGCGGGGucGCCGcGCGGCucgcuCGCgCGGg -3'
miRNA:   3'- aUGUCUCuuCGGU-CGCCGcu---GCG-GCC- -5'
10961 3' -58.7 NC_002794.1 + 13809 0.73 0.439533
Target:  5'- gACGGGcccGGCCGGCGGCGACgGCCu- -3'
miRNA:   3'- aUGUCUcu-UCGGUCGCCGCUG-CGGcc -5'
10961 3' -58.7 NC_002794.1 + 14579 0.66 0.825655
Target:  5'- gGCcGAccGAAGCgGGCcguGGCGagcGCGCCGGg -3'
miRNA:   3'- aUGuCU--CUUCGgUCG---CCGC---UGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 14644 0.82 0.146953
Target:  5'- cACGGAGAcGCCGGCGccGCGGCGUCGGu -3'
miRNA:   3'- aUGUCUCUuCGGUCGC--CGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 14754 0.66 0.831356
Target:  5'- -uCGGAgcccGAAGCCgucgaggccgcugaGGcCGGCGAgGCCGGc -3'
miRNA:   3'- auGUCU----CUUCGG--------------UC-GCCGCUgCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 16291 0.74 0.405392
Target:  5'- gGCGGAGucuAGCCuGGCGGCcGCGgCCGGc -3'
miRNA:   3'- aUGUCUCu--UCGG-UCGCCGcUGC-GGCC- -5'
10961 3' -58.7 NC_002794.1 + 17127 0.66 0.84172
Target:  5'- gACGGucGAAGCCGGCgaaacGGCGguaGCGCCc- -3'
miRNA:   3'- aUGUCu-CUUCGGUCG-----CCGC---UGCGGcc -5'
10961 3' -58.7 NC_002794.1 + 19456 0.71 0.589698
Target:  5'- gGCAcGAGcGGCggCGGCGGCGGgaccCGCCGGu -3'
miRNA:   3'- aUGU-CUCuUCG--GUCGCCGCU----GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 19506 0.68 0.733819
Target:  5'- gGCGGAGGucgcGCCGcucggagcgccggcGCGGCGcggccCGCCGGu -3'
miRNA:   3'- aUGUCUCUu---CGGU--------------CGCCGCu----GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 20267 0.69 0.688454
Target:  5'- aGCAGAGA--CCGaCGGCGAccgaacCGCCGGa -3'
miRNA:   3'- aUGUCUCUucGGUcGCCGCU------GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 21366 0.7 0.619333
Target:  5'- -cCAGAGAcG-CGGCGGCGGcCGCCGu -3'
miRNA:   3'- auGUCUCUuCgGUCGCCGCU-GCGGCc -5'
10961 3' -58.7 NC_002794.1 + 21650 0.71 0.589698
Target:  5'- gACGaAGAAGCggCGGCGGUGGCGgCGGc -3'
miRNA:   3'- aUGUcUCUUCG--GUCGCCGCUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 21770 0.67 0.791607
Target:  5'- ---cGAGAAGCCA-CGGCuuCGUCGGc -3'
miRNA:   3'- auguCUCUUCGGUcGCCGcuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 21920 0.74 0.422255
Target:  5'- gGCGGAGAcGaCGGCGGCGGCGCgGc -3'
miRNA:   3'- aUGUCUCUuCgGUCGCCGCUGCGgCc -5'
10961 3' -58.7 NC_002794.1 + 23951 0.8 0.197144
Target:  5'- cGCGGcGcacuuggcuccGAGCCAGCGGCGAgGCCGGc -3'
miRNA:   3'- aUGUCuC-----------UUCGGUCGCCGCUgCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 31044 0.68 0.76463
Target:  5'- gACAGAuAGGgCAGCGGC-ACGgCGGc -3'
miRNA:   3'- aUGUCUcUUCgGUCGCCGcUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 32269 0.66 0.833773
Target:  5'- gACGGcc-GGCCgaucGGCGaGCGACGCCGc -3'
miRNA:   3'- aUGUCucuUCGG----UCGC-CGCUGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.