miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10961 3' -58.7 NC_002794.1 + 32567 0.7 0.658937
Target:  5'- cGCGGAu-AGUCGcgcGCGGCGGUGCCGGg -3'
miRNA:   3'- aUGUCUcuUCGGU---CGCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 32615 0.69 0.667821
Target:  5'- -cCGGGGAucgGGCCcgccgacgaagagGGgGGCGACGaCCGGg -3'
miRNA:   3'- auGUCUCU---UCGG-------------UCgCCGCUGC-GGCC- -5'
10961 3' -58.7 NC_002794.1 + 32860 0.75 0.365145
Target:  5'- aGCGGccGAGCCGGCgGGCGGCGgCGGc -3'
miRNA:   3'- aUGUCucUUCGGUCG-CCGCUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 36895 0.69 0.678648
Target:  5'- gUGCAGAGcguCCAGaggucGCGGCGCCGGc -3'
miRNA:   3'- -AUGUCUCuucGGUCgc---CGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 37330 0.68 0.736662
Target:  5'- aGCGGuGggGCCcgGGCGGCaGCagGUCGGg -3'
miRNA:   3'- aUGUCuCuuCGG--UCGCCGcUG--CGGCC- -5'
10961 3' -58.7 NC_002794.1 + 37734 0.77 0.293253
Target:  5'- aGCGGcGgcGCCGccggcggcggcGCGGCGGCGCCGGc -3'
miRNA:   3'- aUGUCuCuuCGGU-----------CGCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 37887 0.71 0.570076
Target:  5'- gGCGGGGgcGgUGGCGGCGGCagcggcucGCCGGc -3'
miRNA:   3'- aUGUCUCuuCgGUCGCCGCUG--------CGGCC- -5'
10961 3' -58.7 NC_002794.1 + 38449 0.72 0.540963
Target:  5'- gACuGAGGAGCCGGCGcggccGCGGCGCg-- -3'
miRNA:   3'- aUGuCUCUUCGGUCGC-----CGCUGCGgcc -5'
10961 3' -58.7 NC_002794.1 + 38487 0.81 0.150646
Target:  5'- gGCGGAgGAAGC--GCGGCGGCGCCGGu -3'
miRNA:   3'- aUGUCU-CUUCGguCGCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 38605 0.68 0.727157
Target:  5'- gAC-GAGAGGCCGGacgGGCGcgucccgacuCGCCGGu -3'
miRNA:   3'- aUGuCUCUUCGGUCg--CCGCu---------GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 40338 0.71 0.560323
Target:  5'- cGCGGAcgcGCCAcCGGCGGCGCCGc -3'
miRNA:   3'- aUGUCUcuuCGGUcGCCGCUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 40541 0.68 0.718537
Target:  5'- gACGaGGggGCCGGCGGCaugagcuucucguucGCGCCGu -3'
miRNA:   3'- aUGUcUCuuCGGUCGCCGc--------------UGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 41227 0.66 0.84172
Target:  5'- -cCGGGGAuuccucccacGCC-GCGGCcgccGACGCCGGc -3'
miRNA:   3'- auGUCUCUu---------CGGuCGCCG----CUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 42588 0.68 0.76463
Target:  5'- gACGGAGGAGggcGCGGCG--GCCGGg -3'
miRNA:   3'- aUGUCUCUUCgguCGCCGCugCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 42651 0.74 0.397122
Target:  5'- cGCGGccGAAGCCGaCGGCGcCGCCGGc -3'
miRNA:   3'- aUGUCu-CUUCGGUcGCCGCuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 44060 0.68 0.736662
Target:  5'- gGCAGcgacAGAAGCCGcucGUGGUGACauaCCGGg -3'
miRNA:   3'- aUGUC----UCUUCGGU---CGCCGCUGc--GGCC- -5'
10961 3' -58.7 NC_002794.1 + 44279 0.66 0.849487
Target:  5'- gACGGAGGAGUCcGCGcc--CGCCGGg -3'
miRNA:   3'- aUGUCUCUUCGGuCGCcgcuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 44311 0.75 0.342356
Target:  5'- gGCGGGGAgcgaccgcgAGCgCGGCGGCGaagaagacgGCGCCGGc -3'
miRNA:   3'- aUGUCUCU---------UCG-GUCGCCGC---------UGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 44550 0.7 0.619333
Target:  5'- -----cGucGCCGGCGGCGGCGCCc- -3'
miRNA:   3'- augucuCuuCGGUCGCCGCUGCGGcc -5'
10961 3' -58.7 NC_002794.1 + 44719 0.72 0.531367
Target:  5'- cGCGGcGAcGUCGGcCGGCGcCGCCGGa -3'
miRNA:   3'- aUGUCuCUuCGGUC-GCCGCuGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.