miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10961 3' -58.7 NC_002794.1 + 45672 0.68 0.727157
Target:  5'- cGCAGaAGAgcAGCCAGagcaGGgccuCGACGUCGGa -3'
miRNA:   3'- aUGUC-UCU--UCGGUCg---CC----GCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 47938 0.68 0.736662
Target:  5'- cGCAGAucGgcGCCGcGCGuccCGGCGCCGGc -3'
miRNA:   3'- aUGUCU--CuuCGGU-CGCc--GCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 49409 0.68 0.746081
Target:  5'- cACGGc--GGCC-GCGGCGGCGgCGGc -3'
miRNA:   3'- aUGUCucuUCGGuCGCCGCUGCgGCC- -5'
10961 3' -58.7 NC_002794.1 + 49610 0.71 0.589698
Target:  5'- gACGGcGGgcGCCGGCGGCGccuCGCCc- -3'
miRNA:   3'- aUGUC-UCuuCGGUCGCCGCu--GCGGcc -5'
10961 3' -58.7 NC_002794.1 + 50577 0.66 0.825655
Target:  5'- cACGGcGu-GCgCGGCGGCuggguggccGGCGCCGGg -3'
miRNA:   3'- aUGUCuCuuCG-GUCGCCG---------CUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 51214 0.67 0.817372
Target:  5'- cGCGGAGcGGCCGGcCGGcCGAUGggaaaCGGu -3'
miRNA:   3'- aUGUCUCuUCGGUC-GCC-GCUGCg----GCC- -5'
10961 3' -58.7 NC_002794.1 + 52887 0.66 0.864463
Target:  5'- gAUGGuGggGUCGaacGCGGCGcCGCCGc -3'
miRNA:   3'- aUGUCuCuuCGGU---CGCCGCuGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 53523 0.69 0.678648
Target:  5'- gAUGGAGAAGCCGugggcGCGGCGGcCGCa-- -3'
miRNA:   3'- aUGUCUCUUCGGU-----CGCCGCU-GCGgcc -5'
10961 3' -58.7 NC_002794.1 + 54990 0.67 0.773744
Target:  5'- cGCGGcGA---CGGCGGCGAcuCGCCGGg -3'
miRNA:   3'- aUGUCuCUucgGUCGCCGCU--GCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 55211 0.75 0.357433
Target:  5'- cGCGGcGGAGGCCGGCGGuCGA-GCCGa -3'
miRNA:   3'- aUGUC-UCUUCGGUCGCC-GCUgCGGCc -5'
10961 3' -58.7 NC_002794.1 + 55287 0.73 0.457206
Target:  5'- gGCGGcgacGAGGgCGGCGGCGGCGUCGcGg -3'
miRNA:   3'- aUGUCu---CUUCgGUCGCCGCUGCGGC-C- -5'
10961 3' -58.7 NC_002794.1 + 55773 0.71 0.586746
Target:  5'- aGCAGgaAGAAGCUGGCGuuggccuccagcgaGCGcaGCGCCGGg -3'
miRNA:   3'- aUGUC--UCUUCGGUCGC--------------CGC--UGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 56307 0.72 0.540963
Target:  5'- cGCGGucgcGGucGCUGGCGGcCGugGCCGGc -3'
miRNA:   3'- aUGUC----UCuuCGGUCGCC-GCugCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 60521 0.7 0.658937
Target:  5'- cACGGAGggGCUGGUGGaGAaGCCGu -3'
miRNA:   3'- aUGUCUCuuCGGUCGCCgCUgCGGCc -5'
10961 3' -58.7 NC_002794.1 + 60629 0.74 0.422255
Target:  5'- gACGGGcGGAcCCGGCgccGGCGGCGCCGGc -3'
miRNA:   3'- aUGUCU-CUUcGGUCG---CCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 61521 0.69 0.668806
Target:  5'- gACGGcGGccGCCGGCGGCcgccgcgaagacGACGCCGc -3'
miRNA:   3'- aUGUC-UCuuCGGUCGCCG------------CUGCGGCc -5'
10961 3' -58.7 NC_002794.1 + 62055 0.81 0.154423
Target:  5'- cGguGGccGAcGCCGGCGGCGACGCCGGc -3'
miRNA:   3'- aUguCU--CUuCGGUCGCCGCUGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 62081 0.68 0.736662
Target:  5'- nGCGGcGAcgacGGCgAcGCGGCG-CGCCGGa -3'
miRNA:   3'- aUGUCuCU----UCGgU-CGCCGCuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 62490 0.73 0.457206
Target:  5'- aGCGcGAGuggacGGCgGGCGGCGcCGCCGGc -3'
miRNA:   3'- aUGU-CUCu----UCGgUCGCCGCuGCGGCC- -5'
10961 3' -58.7 NC_002794.1 + 64822 0.72 0.531367
Target:  5'- gGCGGc-GAGCCGGCGcCGACGaCCGGa -3'
miRNA:   3'- aUGUCucUUCGGUCGCcGCUGC-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.